New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3427532	39 (0.800)	3 (0.060)	3/240	NT	7.6%	coding (1438/2037 nt)	PP_3042	terminase large subunit
	?	NC_002947	= 3427557	35 (0.740)					coding (1463/2037 nt)	PP_3042	terminase large subunit

ACCGTTTGAAAGTTCGGTATCGGCATCCATGCGGCGTGAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCG  >  NC_002947/3427386‑3427679                                                                                                                                                   |                                                                                                                                                    aCCGTTTGAAAGTTCGGTATTGGCGTCCATGCGGCGTGATGCTGGCAATCCTTGCCACCGGCATCGGCTACAGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGCGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGa                                                                                                                                                  >  2:514959/1‑150 (MQ=255)         aaaGTTCGGTATCGGCATCCATGCGGCGTGAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTAGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCg                                                                                                                                          >  2:329070/1‑150 (MQ=255)                    tCGGCATCCATGCGGCGTGAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGt                                                                                                                               >  2:508714/1‑150 (MQ=255)                             aTGCGGCGTGATCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCACCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGGAAGGCGGTGATCGCCCa                                                                                                                      >  2:158625/1‑150 (MQ=255)                                 ggcgTGAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGatcaccgccttacccggcttgctcgcgcccttgag                                                                                                                  <  2:205762‑M1/150‑36 (MQ=255)                                 ggcgTGAGACTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGcgt                                                                                                                  >  2:516136/1‑150 (MQ=255)                                      gAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGcgtccgtc                                                                                                             <  1:639338/150‑1 (MQ=255)                                        gCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTcac                                                                                                           >  2:917182/1‑150 (MQ=255)                                         ccTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTcaca                                                                                                          >  2:396115/1‑150 (MQ=255)                                            ggCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGa                                                                                                                                                  >  1:677188/1‑107 (MQ=255)                                            ggCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGa                                                                                                                                                  <  2:677188/107‑1 (MQ=255)                                            ggCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGt                                                                                                       <  2:88237/150‑1 (MQ=255)                                             gCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTg                                                                                                      <  2:511717/150‑1 (MQ=255)                                             gCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTg                                                                                                      <  2:512236/150‑1 (MQ=255)                                                aTCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGAc                                                                                                   <  2:129335/150‑1 (MQ=255)                                                 tCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGagg                                                                                                  >  1:192141/1‑148 (MQ=255)                                                           cGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGaa                                                                                        >  1:97606/1‑150 (MQ=255)                                                                 cgtcTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAACGGAGCGAGCAAGTCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCa                                                                                  <  1:158625/147‑1 (MQ=255)                                                                   aCTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTAGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGa                                                                                <  1:329070/150‑1 (MQ=255)                                                                           ggTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGa                                                                                                                                                  <  2:642564/76‑1 (MQ=255)                                                                           ggTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGa                                                                                                                                                  >  1:642564/1‑76 (MQ=255)                                                                             tCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCaa                                                                      <  1:200106/150‑1 (MQ=255)                                                                                ccATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGt                                                                                                                                       >  1:1125723/1‑82 (MQ=255)                                                                                ccATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGt                                                                                                                                       <  2:1125723/82‑1 (MQ=255)                                                                                ccATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGt                                                                                                                               >  1:868507/1‑90 (MQ=255)                                                                                ccATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGt                                                                                                                               <  2:868507/90‑1 (MQ=255)                                                                                   tACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGc                                                                <  2:148759/150‑1 (MQ=255)                                                                                   tACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGc                                                                <  1:917182/150‑1 (MQ=255)                                                                                            ggTATACCAATTCACTCGTGTGCGCCGTTGGCGCCACGTGTTCGCGCTCAAGCGCGCGAGCAAGCCCGGTAATGCGGTGATCGCCCACCGTCCGTCACAAGCGGACGAAACCTTGAAGGGCCAGACCTAGCACAACAGTGCCGAGTtttg                                                       >  2:142864/1‑150 (MQ=255)                                                                                               ataCCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGatcaccgccttacccggcttgctc                                                                                                                             >  2:1257117‑M1/1‑53 (MQ=255)                                                                                               ataCCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGatcaccgccttacccggcttgctc                                                                                                                             <  1:1257117‑M1/77‑25 (MQ=255)                                                                                                   cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGc                                                                                                                    <  2:1073412/82‑1 (MQ=255)                                                                                                   cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGc                                                                                                                    >  1:1073412/1‑82 (MQ=255)                                                                                                   cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGtt                                                >  1:176125/1‑150 (MQ=255)                                                                                                   cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGtt                                                <  1:396115/150‑1 (MQ=255)                                                                                                      ttCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATcgcc                                                                                                                        <  2:215183‑M2/75‑5 (MQ=255)                                                                                                      ttCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATcgcc                                                                                                                        >  1:215183‑M2/1‑71 (MQ=255)                                                                                                         aCTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTAcc                                          >  2:609857/1‑150 (MQ=255)                                                                                                           tCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGa                                        >  1:537242/1‑150 (MQ=255)                                                                                                                tgCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACgg                                   >  1:679467/1‑150 (MQ=255)                                                                                                                       ttGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGa                            <  1:514959/150‑1 (MQ=255)                                                                                                                          gcgcAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTg                         >  1:731032/1‑150 (MQ=255)                                                                                                                              aaCGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGa                                                             >  2:195094/1‑110 (MQ=255)                                                                                                                              aaCGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGa                                                             <  1:195094/110‑1 (MQ=255)                                                                                                                                   gtTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAgggg                                                                                    <  2:502942/82‑1 (MQ=255)                                                                                                                                   gtTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAgggg                                                                                    >  1:502942/1‑82 (MQ=255)                                                                                                                                    ttCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAAc               <  2:176125/150‑1 (MQ=255)                                                                                                                                          cTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATcgcccttgagcgcgaacacgttgcgccaacggcgcacacgagtgaattggtatacctcatgcgtatggtgaccgccggagtcgatgccggtggcaaggattgccaggctcacgcc         <  2:205762‑M2/150‑116 (MQ=255)                                                                                                                                          cTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTAc         <  2:97606/150‑1 (MQ=255)                                                                                                                                             aaGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAAc      >  1:584232/1‑150 (MQ=255)                                                                                                                                                ggCGatcaccgccttacccggcttgctcgcgcccttgagcgcgaacacgttgcgccaacggcgcacacgagtgaa                                                                              >  1:215183‑M1/1‑4 (MQ=255)                                                                                                                                                ggCGatcaccgccttacccggcttgctcgcgcccttgagcgcgaacacgttgcgccaacggcgcacacgagtgaa                                                                              <  2:215183‑M1/75‑72 (MQ=255)                                                                                                                                                 gcgcGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACgg                                   <  1:204685/117‑1 (MQ=255)                                                                                                                                                 gcgcGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACgg                                   >  2:204685/1‑117 (MQ=255)                                                                                                                                                 gcgcGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCg  >  1:523841/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                    ACCGTTTGAAAGTTCGGTATCGGCATCCATGCGGCGTGAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCG  >  NC_002947/3427386‑3427679

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.