New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3427532	39 (0.800)	3 (0.060)	3/240	NT	7.6%	coding (1438/2037 nt)	PP_3042	terminase large subunit
	?	NC_002947	= 3427557	35 (0.740)					coding (1463/2037 nt)	PP_3042	terminase large subunit

ATGCGGCGTGAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCGAGAAGGGACCTGGTGC  >  NC_002947/3427414‑3427695                                                                                                                                                |                                                                                                                                           aTGCGGCGTGATCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCACCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGGAAGGCGGTGATCGCCCa                                                                                                                                      >  2:158625/1‑150 (MQ=255)     ggcgTGAGACTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGcgt                                                                                                                                  >  2:516136/1‑150 (MQ=255)          gAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGcgtccgtc                                                                                                                             <  1:639338/150‑1 (MQ=255)            gCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTcac                                                                                                                           >  2:917182/1‑150 (MQ=255)             ccTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTcaca                                                                                                                          >  2:396115/1‑150 (MQ=255)                ggCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGt                                                                                                                       <  2:88237/150‑1 (MQ=255)                 gCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTg                                                                                                                      <  2:512236/150‑1 (MQ=255)                 gCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTg                                                                                                                      <  2:511717/150‑1 (MQ=255)                    aTCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGAc                                                                                                                   <  2:129335/150‑1 (MQ=255)                     tCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGagg                                                                                                                  >  1:192141/1‑148 (MQ=255)                               cGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGaa                                                                                                        >  1:97606/1‑150 (MQ=255)                                     cgtcTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAACGGAGCGAGCAAGTCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCa                                                                                                  <  1:158625/147‑1 (MQ=255)                                       aCTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTAGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGa                                                                                                <  1:329070/150‑1 (MQ=255)                                                 tCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCaa                                                                                      <  1:200106/150‑1 (MQ=255)                                                       tACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGc                                                                                <  2:148759/150‑1 (MQ=255)                                                       tACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGc                                                                                <  1:917182/150‑1 (MQ=255)                                                                ggTATACCAATTCACTCGTGTGCGCCGTTGGCGCCACGTGTTCGCGCTCAAGCGCGCGAGCAAGCCCGGTAATGCGGTGATCGCCCACCGTCCGTCACAAGCGGACGAAACCTTGAAGGGCCAGACCTAGCACAACAGTGCCGAGTtttg                                                                       >  2:142864/1‑150 (MQ=255)                                                                       cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGc                                                                                                                                    >  1:1073412/1‑82 (MQ=255)                                                                       cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGc                                                                                                                                    <  2:1073412/82‑1 (MQ=255)                                                                       cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGtt                                                                >  1:176125/1‑150 (MQ=255)                                                                       cAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGtt                                                                <  1:396115/150‑1 (MQ=255)                                                                          ttCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATcgcc                                                                                                                                        <  2:215183‑M2/75‑5 (MQ=255)                                                                          ttCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATcgcc                                                                                                                                        >  1:215183‑M2/1‑71 (MQ=255)                                                                             aCTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTAcc                                                          >  2:609857/1‑150 (MQ=255)                                                                               tCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGa                                                        >  1:537242/1‑150 (MQ=255)                                                                                    tgCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACgg                                                   >  1:679467/1‑150 (MQ=255)                                                                                           ttGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGa                                            <  1:514959/150‑1 (MQ=255)                                                                                              gcgcAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTg                                         >  1:731032/1‑150 (MQ=255)                                                                                                  aaCGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGa                                                                             <  1:195094/110‑1 (MQ=255)                                                                                                  aaCGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGa                                                                             >  2:195094/1‑110 (MQ=255)                                                                                                       gtTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAgggg                                                                                                    >  1:502942/1‑82 (MQ=255)                                                                                                       gtTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAgggg                                                                                                    <  2:502942/82‑1 (MQ=255)                                                                                                        ttCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAAc                               <  2:176125/150‑1 (MQ=255)                                                                                                              cTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATcgcccttgagcgcgaacacgttgcgccaacggcgcacacgagtgaattggtatacctcatgcgtatggtgaccgccggagtcgatgccggtggcaaggattgccaggctcacgcc                         <  2:205762‑M2/150‑116 (MQ=255)                                                                                                              cTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTAc                         <  2:97606/150‑1 (MQ=255)                                                                                                                 aaGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAAc                      >  1:584232/1‑150 (MQ=255)                                                                                                                     gcgcGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACgg                                                   >  2:204685/1‑117 (MQ=255)                                                                                                                     gcgcGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACgg                                                   <  1:204685/117‑1 (MQ=255)                                                                                                                     gcgcGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCg                  >  1:523841/1‑150 (MQ=255)                                                                                                                         gAGCAAGCCGGGTAAGGCGGTGATcgcccttgagcgcgaacacgttgcgccaacggcgcacacgagtgaattggtat                                                                                       >  2:1257117‑M2/1‑24 (MQ=255)                                                                                                                         gAGCAAGCCGGGTAAGGCGGTGATcgcccttgagcgcgaacacgttgcgccaacggcgcacacgagtgaattggtat                                                                                       <  1:1257117‑M2/77‑54 (MQ=255)                                                                                                                             aaGCCGGGTAAGGCGGTTATCGCCCAGCGTCCTTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGTTGCCGAGTTGTGGATCTTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCGAGAAGGGa          <  1:516136/150‑1 (MQ=255)                                                                                                                                 cGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCGAGAAGGGACCTg      <  2:679467/150‑1 (MQ=255)                                                                                                                                     tAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCGAGAAGGGACCTGGTGc  <  1:142864/150‑1 (MQ=255)                                                                                                                                                |                                                                                                                                           ATGCGGCGTGAGCCTGGCAATCCTTGCCACCGGCATCGACTCCGGCGGTCACCATACGCATGAGGTATACCAATTCACTCGTGTGCGCCGTTGGCGCAACGTGTTCGCGCTCAAGGGCGCGAGCAAGCCGGGTAAGGCGGTGATCGCCCAGCGTCCGTCACAAGTGGACGTAACCTGGAAGGGGCAGACCGAGCGCAACGGTGCCGAGTTGTGGATCGTTGGTACCGACACGGCCAAAGACTGGATCTACAACCGCTACAACTTCGAGAAGGGACCTGGTGC  >  NC_002947/3427414‑3427695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.