New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4785811 =	52 (1.060)	3 (0.060)	3/244	NT	5.6%	coding (1548/7887 nt)	pvdJ	non‑ribosomal peptide synthetase
	?	NC_002947	4785847 =	51 (1.070)					coding (1512/7887 nt)	pvdJ	non‑ribosomal peptide synthetase

AGCAGGCCGGTCACCCATTCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCAT  >  NC_002947/4785662‑4785954                                                                                                                                                      |                                                                                                                                                agcagGCCGGTCACCCATTCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAgc                                                                                                                                                 <  2:1241313/150‑1 (MQ=255)      gCCGGTCACCCATTCGATGGAGCGCTCTTGGCACACGGCAAGGACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCNAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCggg                                                                                                                                            <  1:12863/150‑1 (MQ=255)      gCCGGTCACCCATTCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATGGCTCAACTGCTCTGCGCCCGCACGCAGCGCggg                                                                                                                                            >  1:355521/1‑150 (MQ=255)       ccGGTCACCCATTCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCgggg                                                                                                                                           <  2:520503/150‑1 (MQ=255)             aCCCATTCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCGTAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCg                                                                                                                                     >  2:1219024/1‑150 (MQ=255)               ccATTCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCACGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGcc                                                                                                                                   >  2:819814/1‑150 (MQ=255)                   tCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCa                                                                                                                               <  2:360050/150‑1 (MQ=255)                      aTGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTg                                                                                                                            <  1:811834/150‑1 (MQ=255)                      aTGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTg                                                                                                                            <  2:801657/150‑1 (MQ=255)                            cgcTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAgc                                                                                                                      >  1:930404/1‑150 (MQ=255)                                      acaAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGc                                                                                                                          >  1:88315/1‑136 (MQ=255)                                      acaAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGc                                                                                                                          <  2:88315/136‑1 (MQ=255)                                        aaGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTg                                                                                                                            <  2:10481/132‑1 (MQ=255)                                        aaGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTg                                                                                                                            >  1:10481/1‑132 (MQ=255)                                            cAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGc                                                                                                      <  2:1218095/150‑1 (MQ=255)                                               ccACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTga                                                                                                   <  2:316544/150‑1 (MQ=255)                                                cACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTgag                                                                                                  <  2:254191/150‑1 (MQ=255)                                                   tGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGAGCGGCGCTCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGaaa                                                                                               <  1:937108/150‑1 (MQ=255)                                                        ccGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGACCGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCTAGCGCCCGGCGGAACAGGCTGAGAAAGTCCg                                                                                          >  1:1106134/1‑150 (MQ=255)                                                          ggCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATGGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTg                                                                                        <  2:355521/150‑1 (MQ=255)                                                           gCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGc                                                                                       <  2:967711/150‑1 (MQ=255)                                                             ttGACGCGCATTGCCAGCGGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCaa                                                                                     >  2:1045243/1‑150 (MQ=255)                                                             ttGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCCGCTTTCTGCAGCGCGGGGCGCTCGCCGGGATTGGCCAGCGCACGGCGTAAGATGGTGAGAAAGCCCGTGCaa                                                                                     >  1:22854/1‑150 (MQ=255)                                                              tGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGTCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAg                                                                                    <  2:175565/150‑1 (MQ=255)                                                                aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGaaa                                                                                               >  2:1062307/1‑137 (MQ=255)                                                                aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGaaa                                                                                               <  1:1062307/137‑1 (MQ=255)                                                                aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAggg                                                                                  <  1:1004621/150‑1 (MQ=255)                                                                aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAggg                                                                                  <  1:340996/150‑1 (MQ=255)                                                                  gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCaa                                                                                     >  1:975502/1‑145 (MQ=255)                                                                  gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCaa                                                                                     <  2:975502/145‑1 (MQ=255)                                                                  gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa                                                                                <  1:819814/150‑1 (MQ=255)                                                                  gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa                                                                                >  2:565071/1‑150 (MQ=255)                                                                    ccATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGt                                                                                         <  2:1192230/139‑1 (MQ=255)                                                                    ccATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGt                                                                                         >  1:1192230/1‑139 (MQ=255)                                                                                 gtggtgCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa                                                                                >  1:513489/1‑135 (MQ=255)                                                                                 gtggtgCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa                                                                                <  2:513489/135‑1 (MQ=255)                                                                                                 ttCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCg                                                 <  2:930404/150‑1 (MQ=255)                                                                                                   ttgcacggtgagcccgcgagcttcccttgcacggactttctcagcctgttcCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAg                                                                                    <  2:968780‑M1/62‑1 (MQ=255)                                                                                                   cGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGc                                               >  1:950463/1‑150 (MQ=255)                                                                                                   cGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGc                                               <  2:479160/150‑1 (MQ=255)                                                                                                        gCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCCTCGGCATCAc                                          >  1:609579/1‑150 (MQ=255)                                                                                                        gCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCAc                                          >  1:528796/1‑150 (MQ=255)                                                                                                               gAGCTGGGCATAGCTCAACTGCTCTGCGCTCGCACGTAGCGCGCGGTGCTCGCGGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGAcaca                                   <  2:1106134/150‑1 (MQ=255)                                                                                                                      gCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCcagc                            >  1:7778/1‑150 (MQ=255)                                                                                                                            cttgcacggactttctcagcctgttcCGCCGGGCGCTGGCCAATGCCGGCGAGCGCCCCGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCaa                                                           <  1:968780‑M1/87‑1 (MQ=255)                                                                                                                             tCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTTAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGc                     >  1:1253533/1‑150 (MQ=255)                                                                                                                             tCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGCTAGTCCGTGCAAGAGAAGCTGGCGGGGCCACTGGGCAAAGCCGCATCGGCATCACCGACACAGTCCAGCAGCCGGc                     >  1:607216/1‑150 (MQ=255)                                                                                                                               aaCTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTg                   <  2:950463/150‑1 (MQ=255)                                                                                                                                         tctcagcctgttcCGCCGGGCGCTGGCCAATGCCGGCGAGCGCCCCGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCcg         <  2:404371‑M1/137‑1 (MQ=255)                                                                                                                                            ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGaca                                     <  2:876523/119‑1 (MQ=255)                                                                                                                                            ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGaca                                     >  1:876523/1‑119 (MQ=255)                                                                                                                                            ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGa                                       >  1:656301/1‑117 (MQ=255)                                                                                                                                            ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGa                                       <  2:656301/117‑1 (MQ=255)                                                                                                                                            ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGa      >  2:1006252/1‑150 (MQ=255)                                                                                                                                             cgcacgcaGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGAc     <  2:1253533/150‑1 (MQ=255)                                                                                                                                                acgcaGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCAt  <  2:22854/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                AGCAGGCCGGTCACCCATTCGATGGAGCGCTCTTGGCACAAGGCAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCAT  >  NC_002947/4785662‑4785954

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.