New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4785811 = | 52 (1.060) | 3 (0.060) | 3/244 | NT | 5.6% | coding (1548/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
? | NC_002947 | 4785847 = | 51 (1.070) | coding (1512/7887 nt) | pvdJ | non‑ribosomal peptide synthetase |
CAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGC > NC_002947/4785705‑4785989 | cAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGc < 2:1218095/150‑1 (MQ=255) ccACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTga < 2:316544/150‑1 (MQ=255) cACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTgag < 2:254191/150‑1 (MQ=255) cggcacctgccagccggctgctggactgtgtcggtgatgccgatgcggttttgcacggtgagcccgcgagcttcccttgcacggactttctcagcctgttccgcggggcgctcgccggcattggccagcgcccggcgGAACAGGCTgaga < 2:404371‑M2/13‑1 (MQ=255) tGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGAGCGGCGCTCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGaaa < 1:937108/150‑1 (MQ=255) ccGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGACCGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCTAGCGCCCGGCGGAACAGGCTGAGAAAGTCCg > 1:1106134/1‑150 (MQ=255) ggCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATGGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTg < 2:355521/150‑1 (MQ=255) gCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGc < 2:967711/150‑1 (MQ=255) ttGACGCGCATTGCCAGCGGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCaa > 2:1045243/1‑150 (MQ=255) ttGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCCGCTTTCTGCAGCGCGGGGCGCTCGCCGGGATTGGCCAGCGCACGGCGTAAGATGGTGAGAAAGCCCGTGCaa > 1:22854/1‑150 (MQ=255) tGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGTCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAg < 2:175565/150‑1 (MQ=255) aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGaaa > 2:1062307/1‑137 (MQ=255) aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGaaa < 1:1062307/137‑1 (MQ=255) aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAggg < 1:340996/150‑1 (MQ=255) aCGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAggg < 1:1004621/150‑1 (MQ=255) gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCaa < 2:975502/145‑1 (MQ=255) gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCaa > 1:975502/1‑145 (MQ=255) gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa > 2:565071/1‑150 (MQ=255) gCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa < 1:819814/150‑1 (MQ=255) ccATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGt > 1:1192230/1‑139 (MQ=255) ccATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGt < 2:1192230/139‑1 (MQ=255) gtggtgCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa < 2:513489/135‑1 (MQ=255) gtggtgCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGaa > 1:513489/1‑135 (MQ=255) ttCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCg < 2:930404/150‑1 (MQ=255) ttgcacggtgagcccgcgagcttcccttgcacggactttctcagcctgttccgcggggcgctcgccggcattggccagcgcccggcgGAACAGGCTGAGAAAGTCCGTGCAAg < 1:968780‑M2/26‑1 (MQ=255) ttgcacggtgagcccgcgagcttcccttgcacggactttctcagcctgttcCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAg < 2:968780‑M1/62‑1 (MQ=255) cGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGc < 2:479160/150‑1 (MQ=255) cGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGc > 1:950463/1‑150 (MQ=255) gCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCCTCGGCATCAc > 1:609579/1‑150 (MQ=255) gCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCAc > 1:528796/1‑150 (MQ=255) gAGCTGGGCATAGCTCAACTGCTCTGCGCTCGCACGTAGCGCGCGGTGCTCGCGGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGAcaca < 2:1106134/150‑1 (MQ=255) gCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCcagc > 1:7778/1‑150 (MQ=255) cttgcacggactttctcagcctgttccgccgggcgctggccaatgccggcgagcgccccgcgGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCaa < 2:968780‑M2/51‑1 (MQ=255) cttgcacggactttctcagcctgttcCGCCGGGCGCTGGCCAATGCCGGCGAGCGCCCCGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCaa < 1:968780‑M1/87‑1 (MQ=255) tCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTTAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGc > 1:1253533/1‑150 (MQ=255) tCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGCTAGTCCGTGCAAGAGAAGCTGGCGGGGCCACTGGGCAAAGCCGCATCGGCATCACCGACACAGTCCAGCAGCCGGc > 1:607216/1‑150 (MQ=255) aaCTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTg < 2:950463/150‑1 (MQ=255) tctcagcctgttcCGCCGGGCGCTGGCCAATGCCGGCGAGCGCCCCGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCcg < 2:404371‑M1/137‑1 (MQ=255) ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGaca > 1:876523/1‑119 (MQ=255) ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGaca < 2:876523/119‑1 (MQ=255) ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGa < 2:656301/117‑1 (MQ=255) ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGa > 1:656301/1‑117 (MQ=255) ccGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGa > 2:1006252/1‑150 (MQ=255) cgcacgcaGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGAc < 2:1253533/150‑1 (MQ=255) acgcaGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCAt < 2:22854/150‑1 (MQ=255) ggggCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGcaa > 1:672664/1‑150 (MQ=255) cgcTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCaacaac > 2:1228010/1‑150 (MQ=255) cTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGATCATGTCCTGCAACAACgt < 1:1237031/150‑1 (MQ=255) ggCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAg > 1:956755/1‑150 (MQ=255) gCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAgg < 2:607216/150‑1 (MQ=255) gCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAgg > 2:8613/1‑150 (MQ=255) ttGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGcc < 2:672664/150‑1 (MQ=255) gCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTc > 2:346793/1‑150 (MQ=255) ccAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCCTCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCa > 2:356676/1‑150 (MQ=255) cAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGa > 2:615085/1‑83 (MQ=255) cAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGa < 1:615085/83‑1 (MQ=255) gcgcCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCa < 1:8613/150‑1 (MQ=255) gcCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAgg > 1:453540/1‑150 (MQ=255) cccGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGgc > 2:965647/1‑150 (MQ=255) | CAACCACTGCGCCCGGCTTGACGCCCATTGCCAGCAGGTGGTGCGCCAACTGGTTCGAACGCTGATCGAGCTGGGCATAGCTCAACTGCTCTGCGCCCGCACGCAGCGCGGGGCGCTCGCCGGCATTGGCCAGCGCCCGGCGGAACAGGCTGAGAAAGTCCGTGCAAGGGAAGCTCGCGGGCTCACCGTGCAAAACCGCATCGGCATCACCGACACAGTCCAGCAGCCGGCTGGCAGGTGCCGCGACCATGTCCTGCAACAACGTGTGCAGGGCCGTCACCAGGC > NC_002947/4785705‑4785989 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |