New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4954392 | 41 (0.840) | 3 (0.060) | 3/244 | NT | 7.0% | coding (85/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | = 4954427 | 40 (0.840) | coding (50/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator |
CCAATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACAT > NC_002947/4954251‑4954540 | ccaATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa > 1:810128/1‑150 (MQ=255) ccaATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa < 1:581541/150‑1 (MQ=255) aaTGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACg > 2:793111/1‑150 (MQ=255) cTTGATCTGCCGCGCCGCCTCGAAGCCATTCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTg > 1:560420/1‑150 (MQ=255) ttGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc < 2:1097551/150‑1 (MQ=255) ttGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc < 2:505408/150‑1 (MQ=255) gccTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGatcgtgc < 2:810128/150‑7 (MQ=255) gccTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGa < 2:1262569/150‑1 (MQ=255) ccTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGAt < 2:1001956/150‑1 (MQ=255) cTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATc > 1:819202/1‑150 (MQ=255) aaGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAca < 1:35701‑M2/150‑3 (MQ=255) aGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcag > 2:362352‑M2/1‑147 (MQ=255) catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa < 2:1079888/117‑1 (MQ=255) catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa > 1:1079888/1‑117 (MQ=255) catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc < 1:835862/125‑1 (MQ=255) catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc > 2:835862/1‑125 (MQ=255) atccatGACCGGCATCAGGGCGTCAAGCAAAAGCCTTCGAGGGCGCTGCGCGGGGTACAGCCCTACCGCCTCCTCGCAGCTTCGACGGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACt > 1:1254311/1‑150 (MQ=255) catGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTc < 1:1270150/150‑1 (MQ=255) tGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGACGTTGGAGGTGTAGCGCGACCGCCTGCTCGCCGTTTTTATCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCtt < 1:927156/150‑1 (MQ=255) gACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTc < 1:1049506/150‑1 (MQ=255) ccGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTAGCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccaggggcatcaggta < 1:338055‑M1/150‑51 (MQ=255) gCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATGCGCCCGGGCAGAAGGCGATCGACAGCACTGTCTTCGGCGa > 1:66631/1‑150 (MQ=255) gggCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCa > 2:987798/1‑150 (MQ=255) gCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGa > 2:1228347/1‑124 (MQ=255) gCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGa < 1:1228347/124‑1 (MQ=255) tCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGtt > 1:505046/1‑150 (MQ=255) agcagcACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAAc < 2:819202/150‑1 (MQ=255) cagcaCCAGTTGCGGGCGCCGCTCGAGGTACCGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGCTCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGc < 2:742617/150‑1 (MQ=255) gcaCCAGTTGCGGGAGCCACTCGAGGTACCGCGCTACCGTCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCt < 2:66631/150‑1 (MQ=255) aCCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGt > 2:910465/1‑150 (MQ=255) cgTTGCGGGCGCCGCTCGCGGTACAGCGCTACCGCCTGCTCCCCGCTTTCTGGGGTGAATACCTGATGCCCCTGGCGCCGCTCGCGCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcg < 1:199109/149‑1 (MQ=255) cGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcggcc < 1:1039936/148‑1 (MQ=255) cGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcggcc > 2:1039936/1‑148 (MQ=255) gcgcCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCAt > 2:1149521/1‑150 (MQ=255) ccgcTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACTAGCACGGTTAACGCCTGTTCGGCCGGCATGTc < 2:1075770/150‑1 (MQ=255) tACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccagg > 1:1215658‑M1/1‑53 (MQ=255) tACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccagg < 2:1215658‑M1/92‑40 (MQ=255) ccGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa < 1:688767/150‑1 (MQ=255) cTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGtttt > 1:1011392/1‑150 (MQ=255) cGCCGTTTTCAGCGGTGAATACCTGCTGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGtttttt < 1:1149521/150‑2 (MQ=255) ccGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGa < 2:505046/150‑1 (MQ=255) aTACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa > 1:743698/1‑123 (MQ=255) aTACATGATTCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa < 2:743698/123‑1 (MQ=255) tACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcgctagcgctgtacctcgagcggcgcccgcaactggtgctgctggacgccctgatgccgg < 1:338055‑M2/150‑101 (MQ=255) ccTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAAt < 1:910465/150‑1 (MQ=255) cTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATc > 1:3070/1‑150 (MQ=255) tGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCTACCAGCACGGTTAACGCTTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTgc < 1:793111/150‑1 (MQ=255) ccTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgta > 1:1215658‑M2/1‑39 (MQ=255) ccTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgta < 2:1215658‑M2/92‑54 (MQ=255) cTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgtacctcgagcggcgcccgcaactggtgctgctggacgccctgatgccggtcatggatggct > 2:362352‑M1/1‑3 (MQ=255) tGtcgatcgccttctgcttgcgcagatcgtgcgtcgccaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgtacctcgagcggcgcccgcaactggtgctgctggacgccctgatgccggtcatggatggctt < 1:35701‑M1/150‑149 (MQ=255) | CCAATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACAT > NC_002947/4954251‑4954540 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |