New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4954392	41 (0.840)	3 (0.060)	3/244	NT	7.0%	coding (85/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4954427	40 (0.840)					coding (50/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator

AAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACTCGT  >  NC_002947/4954280‑4954576                                                                                                                                                    |                                                                                                                                                      aaGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAca                                                                                                                                                     <  1:35701‑M2/150‑3 (MQ=255)  aGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcag                                                                                                                                                    >  2:362352‑M2/1‑147 (MQ=255)      atccatGACCGGCATCAGGGCGTCAAGCAAAAGCCTTCGAGGGCGCTGCGCGGGGTACAGCCCTACCGCCTCCTCGCAGCTTCGACGGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACt                                                                                                                                                >  1:1254311/1‑150 (MQ=255)         catGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTc                                                                                                                                             <  1:1270150/150‑1 (MQ=255)           tGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGACGTTGGAGGTGTAGCGCGACCGCCTGCTCGCCGTTTTTATCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCtt                                                                                                                                           <  1:927156/150‑1 (MQ=255)            gACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTc                                                                                                                                          <  1:1049506/150‑1 (MQ=255)                 gCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATGCGCCCGGGCAGAAGGCGATCGACAGCACTGTCTTCGGCGa                                                                                                                                     >  1:66631/1‑150 (MQ=255)                       gggCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCa                                                                                                                               >  2:987798/1‑150 (MQ=255)                         gCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGa                                                                                                                                                       <  1:1228347/124‑1 (MQ=255)                         gCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGa                                                                                                                                                       >  2:1228347/1‑124 (MQ=255)                            tCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGtt                                                                                                                          >  1:505046/1‑150 (MQ=255)                               agcagcACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAAc                                                                                                                       <  2:819202/150‑1 (MQ=255)                                 cagcaCCAGTTGCGGGCGCCGCTCGAGGTACCGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGCTCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGc                                                                                                                     <  2:742617/150‑1 (MQ=255)                                   gcaCCAGTTGCGGGAGCCACTCGAGGTACCGCGCTACCGTCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCt                                                                                                                   <  2:66631/150‑1 (MQ=255)                                     aCCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGt                                                                                                                 >  2:910465/1‑150 (MQ=255)                                        cgTTGCGGGCGCCGCTCGCGGTACAGCGCTACCGCCTGCTCCCCGCTTTCTGGGGTGAATACCTGATGCCCCTGGCGCCGCTCGCGCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcg                                                                                                              <  1:199109/149‑1 (MQ=255)                                             cGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcggcc                                                                                                           <  1:1039936/148‑1 (MQ=255)                                             cGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcggcc                                                                                                           >  2:1039936/1‑148 (MQ=255)                                                gcgcCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCAt                                                                                                      >  2:1149521/1‑150 (MQ=255)                                                   ccgcTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACTAGCACGGTTAACGCCTGTTCGGCCGGCATGTc                                                                                                   <  2:1075770/150‑1 (MQ=255)                                                                       ccGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa                                                                               <  1:688767/150‑1 (MQ=255)                                                                              cTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGtttt                                                                        >  1:1011392/1‑150 (MQ=255)                                                                                cGCCGTTTTCAGCGGTGAATACCTGCTGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGtttttt                                                                      <  1:1149521/150‑2 (MQ=255)                                                                                  ccGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGa                                                                    <  2:505046/150‑1 (MQ=255)                                                                                                  aTACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa                                                                               >  1:743698/1‑123 (MQ=255)                                                                                                  aTACATGATTCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa                                                                               <  2:743698/123‑1 (MQ=255)                                                                                                   tACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcgctagcgctgtacctcgagcggcgcccgcaactggtgctgctggacgccctgatgccgg                                                   <  1:338055‑M2/150‑101 (MQ=255)                                                                                                     ccTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAAt                                                 <  1:910465/150‑1 (MQ=255)                                                                                                      cTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATc                                                >  1:3070/1‑150 (MQ=255)                                                                                                          tGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCTACCAGCACGGTTAACGCTTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTgc                                            <  1:793111/150‑1 (MQ=255)                                                                                                              ccTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgta                                                                                                  <  2:1215658‑M2/92‑54 (MQ=255)                                                                                                              ccTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgta                                                                                                  >  1:1215658‑M2/1‑39 (MQ=255)                                                                                                                    gACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGa                                  >  2:823587/1‑150 (MQ=255)                                                                                                                     aCGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAg                                 <  2:778998/150‑1 (MQ=255)                                                                                                                       gCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCt                               >  2:30563/1‑150 (MQ=255)                                                                                                                        cACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTg                              <  2:1254311/150‑1 (MQ=255)                                                                                                                        cACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATAGAAGAGTTTTTCGAAACTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTg                              >  1:162638/1‑150 (MQ=255)                                                                                                                         aCGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGc                                                                                                                     >  2:277454/1‑62 (MQ=255)                                                                                                                         aCGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGc                                                                                                                     <  1:277454/62‑1 (MQ=255)                                                                                                                         aCGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGATCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTgg                             >  2:679857/1‑150 (MQ=255)                                                                                                                               tGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCa                       >  1:794965/1‑150 (MQ=255)                                                                                                                                   cAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTAc                   <  1:30563/150‑1 (MQ=255)                                                                                                                                    aaGCAGAATGCTATCGATAGCACTGTCCTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTAcc                  <  2:162638/150‑1 (MQ=255)                                                                                                                                        aGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCAc                      <  2:453766/142‑1 (MQ=255)                                                                                                                                        aGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCAc                      >  1:453766/1‑142 (MQ=255)                                                                                                                                        aGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGca              >  1:902543/1‑150 (MQ=255)                                                                                                                                               gATCGACCGCAATGTCTTCGGCAACCAGCACGGTGAACTCCTGTTCGGTCGTCATGTCGGCGGTAAACTGATATGGAAGAATTTTTCGAAAGTGGAGATGGCGAGAATCTTGCGCAGATCGGAGATGGCATGAACTACCCGcacagcaga       >  2:502672/1‑145 (MQ=255)                                                                                                                                               gATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGa       <  2:1011392/150‑1 (MQ=255)                                                                                                                                                  cGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACtc    <  2:902543/150‑1 (MQ=255)                                                                                                                                                    aCAGCACTGTCTTCGGCGACCAGCACGGTTAGCGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACtcgt  >  1:1191724/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      AAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACATCGGAGCTGGCATGCACTACCCGCACATCCGACTCGT  >  NC_002947/4954280‑4954576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.