New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2303163 =	48 (0.980)	6 (0.140)	5/226	NT	13.6%	intergenic (‑205/+90)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein
	?	NC_002947	2303221 =	33 (0.740)					intergenic (‑263/+32)	PP_mr30/PP_2027	C4 ncRNA/hypothetical protein

TAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAATCCTCCCCCTGCCAA  >  NC_002947/2303076‑2303361                                                                                                                                                   |                                                                                                                                             tAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCTGCGTA‑CGCGGGCAGTGGGAGCGGGCATGcc                                                                                                                                          >  2:391131/1‑150 (MQ=255)       cTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGCTTCTCGGCTTA‑CGCGGTCAGTGGGAGCGGGCATGCCCTCGaa                                                                                                                                    >  1:35502/1‑150 (MQ=255)           gCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGcc                                                                                                                                          >  2:6684/1‑140 (MQ=255)           gCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGcc                                                                                                                                          <  1:6684/140‑1 (MQ=255)              cgatctttCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCGTTGATATCGGGCATGCCCGCGAAGAGGccc                                                                                                                             <  1:998198/144‑1 (MQ=39)                ttGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGc                                                                                                                           >  2:647739/1‑150 (MQ=255)                    ttCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGTGAGCTGTCATGCCCTCGAAGAGGCCCGCACAg                                                                                                                       <  2:978972/150‑1 (MQ=255)                    ttCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAg                                                                                                                       >  1:1100329/1‑150 (MQ=255)                    ttCTGAAGCATTGGGGTGCATGTTCAGAAAGATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAg                                                                                                                       <  2:397666/150‑1 (MQ=255)                     tCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGATAAC‑ACGTAGTTCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCgagatcg                                                                                                                      >  2:998198/1‑144 (MQ=37)                         aaGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAAc                                                                                                                  <  2:965090/150‑1 (MQ=255)                                    tGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAg                                                                                                                       >  1:1107654/1‑134 (MQ=255)                                    tGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAg                                                                                                                       <  2:1107654/134‑1 (MQ=255)                                          ttCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATaga                                                                                                 <  1:457150/150‑1 (MQ=255)                                              gAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGc                                                                                                                               >  1:562654/1‑116 (MQ=255)                                              gAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGc                                                                                                                               <  2:562654/116‑1 (MQ=255)                                                  tatCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCggcggc                                                                                         >  1:363245/1‑150 (MQ=255)                                                    tCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCaa                                                                                       >  2:1193918/1‑150 (MQ=255)                                                    tCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCaa                                                                                       <  2:723954/150‑1 (MQ=255)                                                      ttACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGc                                                                                     >  2:521149/1‑150 (MQ=255)                                                           gtggtAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCg                                                                                <  2:1171554/150‑1 (MQ=255)                                                               tAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGaa                                                                                                                                    <  1:67976/94‑1 (MQ=255)                                                               tAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGaa                                                                                                                                    >  2:67976/1‑94 (MQ=255)                                                                           tgtTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCTCCGTGCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGgca                                                                <  1:391131/150‑1 (MQ=255)                                                                           tgtTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGgca                                                                <  1:527321/150‑1 (MQ=255)                                                                            gtTCGCGGGCACGCCCGCTCACACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGgcag                                                               <  2:35502/150‑1 (MQ=255)                                                                                          cccgctcccactgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCa                                                  >  2:187003‑M2/58‑150 (MQ=255)                                                                                           ccgctcccactgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGc                                                                                  >  1:1187918‑M2/57‑117 (MQ=255)                                                                                           ccgctcccactgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGc                                                                                  <  2:1187918‑M2/61‑1 (MQ=255)                                                                                           ccgctcccactgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAg                                                 >  2:570351‑M2/57‑150 (MQ=255)                                                                                              tcacacaGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGTAGTATTGAAGCCCACGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCGCAGCTgg                                             >  2:180278/4‑150 (MQ=255)                                                                                                  ACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCTCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCtggctga                                         >  2:860824‑M1/1‑147 (MQ=255)                                                                                                    ctgaccgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGaa                                        <  1:187003‑M2/103‑1 (MQ=255)                                                                                                    aGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAAt                                       <  2:1153790/150‑1 (MQ=255)                                                                                                      gTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATgg                                     <  2:363245/150‑1 (MQ=255)                                                                                                        aCGGCGCAAGGTTATCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTa                                   >  2:69115/1‑150 (MQ=255)                                                                                                         cgcgtacgccgagaaccttgcgccgtacctgtgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTa                                   <  1:570351‑M2/108‑1 (MQ=255)                                                                                                         cGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTAc                                  <  1:647739/150‑1 (MQ=255)                                                                                                              cAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATATAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATc                             >  2:375793/1‑150 (MQ=255)                                                                                                                 ggTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTTGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATcgcc                          >  1:601375/1‑150 (MQ=255)                                                                                                                 ggTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGACAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATcgcc                          >  1:1069218/1‑150 (MQ=255)                                                                                                                   ttCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATcgcccg                        >  2:491153/1‑150 (MQ=255)                                                                                                                                 cgGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAAtcctcc           <  1:69115/150‑1 (MQ=255)                                                                                                                                      aGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAATGCTCCCCCTg      >  1:197483/1‑150 (MQ=255)                                                                                                                                       gtgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAATCCTCCCCCTGc     <  1:491153‑M2/138‑1 (MQ=255)                                                                                                                                        tgggagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAATCCTCCCCCTGcc    >  1:472316‑M2/12‑150 (MQ=255)                                                                                                                                           gagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAATCCTCCCCCTGCCaa  <  1:1192522‑M2/141‑1 (MQ=255)                                                                                                                                           gagcgggcATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAATCCTCCCCCTGCCaa  >  2:1192522‑M2/9‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                             TAATTCCTAAGCGGGTTGATTCTGAAGCATTGGGTTGCAGGTTCAGAAATATCTTACGGTGGTAGCTGCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGTACGGCGCAAGGTTCTCGGCGTA‑CGCGGTCAGTGGGAGCGGGCATGCCCGCGAAGAGGCCCGCACAGGCAACCACTTACTTGGGATAGAGCGGCGGCAAGCTGCCGTTCTCGCCCGCCGGCAGCAACACCTGCTCAGCTGGCGGAATGGTACCAATCGCCCGCCACAAATCCTCCCCCTGCCAA  >  NC_002947/2303076‑2303361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.