New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2981188 =	55 (1.120)	3 (0.070)	3/230	NT	5.9%	coding (1220/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	2981219 =	45 (1.000)					coding (1189/1734 nt)	PP_2607	hypothetical protein

GTTGAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAATCACGCCCGGCT  >  NC_002947/2981070‑2981359                                                                                                                                                      |                                                                                                                                             gTTGAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTa                                                                                                                                              <  2:574983/150‑1 (MQ=255)     aaCTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCgg                                                                                                                                          >  1:53952/1‑150 (MQ=255)         gtgAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCa                                                                                                                                      >  2:1063606/1‑150 (MQ=255)             aaGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGc                                                                                                                                  >  1:1012732/1‑150 (MQ=255)             aaGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGc                                                                                                                                  >  1:302157/1‑150 (MQ=255)                tgtTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTTGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTc                                                                                                                               <  2:1016589/150‑1 (MQ=255)                 gtTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCg                                                                                                                              <  1:318891/150‑1 (MQ=255)                  cgtcaacgagtccgactcctaccaccacttcgtgcacacaatgttcgccaaaggcattgccagctgctggctggtctgcgatgccgaggcaatgaaccgctacgggcttgggccgcgccaggccaagcccgtAGCGGTTCATTGCCTCgg                                                                                                                             <  2:416514‑M2/18‑1 (MQ=255)                         aaaCACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTCCACGGCCTCGGCAGCGCa                                                                                                                      <  2:53952/150‑1 (MQ=255)                              ccTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAcca                                                                                                                 <  1:1151483/150‑1 (MQ=255)                                 gtgGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAccagcc                                                                                                              >  1:512552/1‑150 (MQ=255)                                      tCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAcca                                                                                                                 >  1:199923/1‑142 (MQ=255)                                      tCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAcca                                                                                                                 <  2:199923/142‑1 (MQ=255)                                         accacttcgtgcacacaatgttcgccaaaggcattgccagctgctggctggtctgcgatgccgaggcaatgaaccgctACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGc                                                                                                                                            <  2:736370‑M1/34‑1 (MQ=255)                                         accacttcgtgcacacaatgttcgccaaaggcattgccagctgctggctggtctgcgatgccgaggcaatgaaccgctACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGc                                                                                                                                            >  1:736370‑M1/79‑112 (MQ=255)                                         aCGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTg                                                                                                      >  1:378682/1‑150 (MQ=255)                                         aCGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCAGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTg                                                                                                      >  2:736109/1‑150 (MQ=255)                                           gCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAccagcca                                                                                                             >  1:1011354/1‑141 (MQ=255)                                           gCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAccagcca                                                                                                             <  2:1011354/141‑1 (MQ=255)                                                  gccagggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCt                                                                                             >  2:1052742/1‑150 (MQ=255)                                                    cagggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCttt                                                                                           <  1:173500/150‑1 (MQ=255)                                                      gggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTgg                                                                                         <  2:883917/150‑1 (MQ=255)                                                       ggccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGc                                                                                        <  1:17534/150‑1 (MQ=255)                                                         ccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCAtt                                                                                                                                    >  2:487017/1‑104 (MQ=255)                                                         ccagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCAtt                                                                                                                                    <  1:487017/104‑1 (MQ=255)                                                          cagTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCCGCTGCCAATGCCTTACGCGaa                                                                                     >  2:274360/1‑150 (MQ=255)                                                                cTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATtgt                                                                               <  1:1063606/150‑1 (MQ=255)                                                                    gATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAccagccag                                                                                                            >  1:509/1‑117 (MQ=255)                                                                    gATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGAccagccag                                                                                                            <  2:509/117‑1 (MQ=255)                                                                         ggtggCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGaa                                                                      <  1:940177/150‑1 (MQ=255)                                                                         ggtggCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGaa                                                                      <  2:583499/150‑1 (MQ=255)                                                                          gtggCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATAGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATGGTGTGCACGAAg                                                                     <  2:1012732/150‑1 (MQ=255)                                                                            ggCCCGGAACAGGTAGCGTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAgtg                                                                   <  2:1036823/150‑1 (MQ=255)                                                                              cccGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGc                                                                                                                            <  1:45656/91‑1 (MQ=255)                                                                              cccGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGc                                                                                                                            >  2:45656/1‑91 (MQ=255)                                                                                cGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGtggtgg                                                               <  2:378682/150‑1 (MQ=255)                                                                                   tACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAg                                                            <  1:274360/150‑1 (MQ=255)                                                                                      aGGGAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGGCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAg                                                         <  1:736109/150‑1 (MQ=255)                                                                                        gTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGCTCATTGCCTCGGCGTCGCCGACCAGCCGGCAGCTTGCAATGCCTTTGGCGCACCTTGTGTGCACCAGGCGGTGGTCGGAggc                                                       >  2:274658/1‑148 (MQ=255)                                                                                         tAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCg                                                      <  1:1052742/150‑1 (MQ=255)                                                                                             cTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACt                                                  >  1:58518/1‑150 (MQ=255)                                                                                                   cGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGa                                            <  2:302157/150‑1 (MQ=255)                                                                                                     ccgaggcaatgaaccgctACGGGCTTGGCCTGGCGCGGCCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACg                                          <  2:416514‑M1/132‑1 (MQ=255)                                                                                                      tCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAg                                                            <  2:499053/131‑1 (MQ=255)                                                                                                      tCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAg                                                            >  1:499053/1‑131 (MQ=255)                                                                                                        aaCGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAg                                       <  2:514113/150‑1 (MQ=255)                                                                                                         aCGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAgc                                      >  1:1088534/1‑150 (MQ=255)                                                                                                         aCGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGCCATTACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAgc                                      >  1:336607/1‑150 (MQ=255)                                                                                                                    gctacgggcttggcctggcgcggcccaagcccgtAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAgtggt                                                                 <  2:736370‑M2/78‑1 (MQ=255)                                                                                                                    gctacgggcttggcctggcgcggcccaagcccgtAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAgtggt                                                                 >  1:736370‑M2/35‑112 (MQ=255)                                                                                                                        CGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGt                       >  1:201182‑M1/1‑150 (MQ=255)                                                                                                                                 gCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTGGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCaa              >  1:621936/1‑150 (MQ=255)                                                                                                                                 gCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCaa              >  1:102907/1‑150 (MQ=255)                                                                                                                                  ccGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAAt             >  2:671186/1‑150 (MQ=255)                                                                                                                                            tcaggcccgtAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAATCACGCCcggg   >  1:685867‑M2/11‑149 (MQ=255)                                                                                                                                             caagcccgtAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAATCACGCCCGGCt  <  2:102907‑M2/141‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                             GTTGAACTGTGAAAGTGTTTGCGCAAACACCTGTGGATCGACGCCGATGGCCAGGGCCAGTGCCTGCGATGTGGTGGCCCGGTACAGGTAGCCTGCGTCGATCAACGCCTGGTTGTTGACGGGCTTGGGCCGCGCCAGGCCAAGCCCGTAGCGGTTCATTGCCTCGGCATCGCAGACCAGCCAGCAGCTGGCAATGCCTTTGGCGAACATTGTGTGCACGAAGTGGTGGTAGGAGTCGGACTCGTTGACGAAGCGCCGCCCGGTTTGGTCTACCGCAATCACGCCCGGCT  >  NC_002947/2981070‑2981359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.