| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3477615 = | 103 (0.900) | 6 (0.050) | 6/238 | NT | 5.4% | coding (394/1086 nt) | PP_3088 | hypothetical protein |
| ? | NC_002947 | 3477648 = | 110 (0.990) | coding (361/1086 nt) | PP_3088 | hypothetical protein | |||||
CTGGCTCTGCGAGGGGCTGGCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3477766‑3477615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGA > NC_002947/3477648‑3477722 CTGGCTCTGCGAGGGGCTGGCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTG > 2:890253/1‑150CTGGCTCTGCGAGGGGCTGGCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTG > 2:1654095/1‑150 GGCTCTGCGAGGGGCTGGCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGC < 1:1743501/150‑1 GGCTCTGCGAGGGGCTGGCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGC < 2:1762347/150‑1 GGCTCTGCGAGGGGCTGGCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGC < 2:2301626/150‑1 GCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGG > 1:476258/1‑132 GCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGG < 2:476258/132‑1 TTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGG < 1:705462/102‑1 TTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGG > 2:705462/1‑102 ACTGTACCCCACCCTCGAAGACGGCCTGGACGCGCGCGCGGCGCGACTGTCCTGGCTGTCTTCGAGG > 1:728210/1‑67 ACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGCTGTCTTCGAGG < 2:728210/67‑1 GGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTC < 2:998015/86‑1 GGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTC > 1:998015/1‑86 CCTGGACGAGCGCGCGGCGCGACTGTCCTGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAG < 2:2560506/90‑1 CCTGGACGAGCGCGCGGCGCGACTGTCCTGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAG > 1:2560506/1‑90 CCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGA < 2:758708/76‑1 CCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGA > 1:758708/1‑76 CTGGCTCTGCGAGGGGCTGGCCCAGCGTGAACACTTCGAAGGCATCACCTTTGGCCTCGAGCTGACCGAACAGCTCCTGGTTGCGTTCTGGGAAACACTGTACCCCACCCTCGAAGACGGCCTGGACGAGCGCGCGGCGCGACTGTCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3477766‑3477615‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGA > NC_002947/3477648‑3477722 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |