New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3477615 =103 (0.900)6 (0.050) 6/238 NT 5.4% coding (394/1086 nt) PP_3088 hypothetical protein
?NC_002947 3477648 = 110 (0.990)coding (361/1086 nt) PP_3088 hypothetical protein

Only 100 of 126 total aligned reads displayed.

TTGCCTTCGTTCAGTGCTGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCAGAGCC  >  NC_002947/3477467‑3477764
                                                                                                                                                    |                                                                                                                                                     
ttGCCTTCGTTCAGTGCTGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGc                                                                                                                                                      >  1:2100771/1‑150 (MQ=255)
 tGCCTTCGTTCAGTGCTGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGGTCTCTACATGGCGTGATTCGTCATCAGGCAGGACAGCAAAATTCTGCCCCTGGATAATGGGCACGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGcc                                                                                                                                                     >  1:2065896/1‑150 (MQ=255)
    cTTCGTTCAGTGCTGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAgg                                                                                                                                                  >  2:1632647/1‑150 (MQ=255)
       cGTTCAGTGCTGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTTAGCCAGGACa                                                                                                                                               >  1:658463/1‑150 (MQ=255)
            aGTGCTGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTATGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTcgc                                                                                                                                          <  1:1784376/150‑1 (MQ=255)
                 tGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACGCGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTcgcgccgc                                                                                                                                     <  1:1905727/150‑1 (MQ=255)
                 tGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTcgcgccgc                                                                                                                                     >  2:278049/1‑150 (MQ=255)
                 tGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTcgcgccgc                                                                                                                                     >  2:1128738/1‑150 (MQ=255)
                     tGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCgcgcgc                                                                                                                                 >  2:2507838/1‑150 (MQ=255)
                        aTCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCg                                                                                                                              <  2:893090/150‑1 (MQ=255)
                         tCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGt                                                                                                                             >  2:2667581/1‑150 (MQ=255)
                                   gTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGt                                                                                                                                             >  1:2094144/1‑124 (MQ=255)
                                   gTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGt                                                                                                                                             <  2:2094144/124‑1 (MQ=255)
                                   gTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTc                                                                                                                   >  2:1249042/1‑150 (MQ=255)
                                      ttGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTc                                                                                                                <  2:2516539/150‑1 (MQ=255)
                                        gCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCCTAGGTTAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGa                                                                                                              <  1:162660/150‑1 (MQ=255)
                                         cAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAg                                                                                                             >  2:2963628/1‑150 (MQ=255)
                                          aaGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAgg                                                                                                            >  1:120792/1‑150 (MQ=255)
                                          aaGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAgg                                                                                                            >  2:1665309/1‑150 (MQ=255)
                                          aaGGCGAGCTGCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAgg                                                                                                            <  1:1665309/150‑1 (MQ=255)
                                             gCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTg                                                                                                         <  1:176689/150‑1 (MQ=255)
                                               gAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTggg                                                                                                       <  1:1128738/150‑1 (MQ=255)
                                               gAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTggg                                                                                                       <  2:149005/150‑1 (MQ=255)
                                                 ggTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGt                                                                                                     >  2:1933617/1‑150 (MQ=255)
                                                 ggTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGt                                                                                                     >  1:807242/1‑150 (MQ=255)
                                                    tctcTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACa                                                                                                  <  2:1319289/150‑1 (MQ=255)
                                                     ctctACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAg                                                                                                 <  2:1971180/150‑1 (MQ=255)
                                                      tctACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTTCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAgg                                                                                                            <  1:1357574/138‑1 (MQ=255)
                                                      tctACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTTCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAgg                                                                                                            >  2:1357574/1‑138 (MQ=255)
                                                      tctACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAgt                                                                                                >  1:738843/1‑150 (MQ=255)
                                                         aCATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGtt                                                                                             <  2:2430807/150‑1 (MQ=255)
                                                         aCATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGtt                                                                                             <  1:1416257/150‑1 (MQ=255)
                                                          cATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGttt                                                                                            <  1:1170066/150‑1 (MQ=255)
                                                           aTGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGGCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTc                                                                                           >  1:1439615/1‑150 (MQ=255)
                                                            tGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTcc                                                                                          <  1:1128981/150‑1 (MQ=255)
                                                              gCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCa                                                                                        <  1:442304/150‑1 (MQ=255)
                                                                 tGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGaa                                                                                     <  2:280031/150‑1 (MQ=255)
                                                                    ttCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACa                                                                                                  >  2:2762177/1‑134 (MQ=255)
                                                                    ttCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACa                                                                                                  <  1:2762177/134‑1 (MQ=255)
                                                                    ttCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGaa                                                                                     >  1:517542/1‑147 (MQ=255)
                                                                    ttCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGaa                                                                                     <  2:517542/147‑1 (MQ=255)
                                                                       gTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCa                                                                                        >  1:1393004/1‑141 (MQ=255)
                                                                       gTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCa                                                                                        <  2:1393004/141‑1 (MQ=255)
                                                                        tCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAAcc                                                                              <  1:2963628/150‑1 (MQ=255)
                                                                         tcacctttggcctcgagctgaccgaacagctcctggttgcgttctgggaaacactgtaccccaccctcgaagacgg                                                                                                                                                       <  2:758708‑M1/1‑1 (MQ=255)
                                                                          agaGCGCAACACCAAAAACTTCTGCACATGGATGATTGTTAACCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAg                                                                            <  2:807242/148‑1 (MQ=255)
                                                                          aTAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAg                                                                                                                                                   >  1:2121243/1‑79 (MQ=255)
                                                                          aTAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAg                                                                                                                                                   <  2:2121243/79‑1 (MQ=255)
                                                                             gcgcAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAg                                                                         <  1:1632647/150‑1 (MQ=255)
                                                                             gcgcAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAg                                                                         <  2:120792/150‑1 (MQ=255)
                                                                               gcAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCt                                                                       <  2:2100771/150‑1 (MQ=255)
                                                                                   cacGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGGTc                                                                   <  2:2205403/150‑1 (MQ=255)
                                                                                     cGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCgg                                                                 <  1:2616918/150‑1 (MQ=255)
                                                                                      gCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAg                                                                            >  2:2542417/1‑138 (MQ=255)
                                                                                      gCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAg                                                                            <  1:2542417/138‑1 (MQ=255)
                                                                                      gCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGt                                                                >  2:1196048/1‑150 (MQ=255)
                                                                                         aaaaTTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAg                                                             >  2:2308667/1‑150 (MQ=255)
                                                                                          ctgaccgaacagctcctggttgcgttctgggaaacactgtaccccaccctcgaagacgGCCAGGACAGTCGCGCCGCGCGCTCGTCCAgg                                                                                                                        >  1:2560506‑M1/59‑90 (MQ=255)
                                                                                              tCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGa                                                        <  1:1249042/150‑1 (MQ=255)
                                                                                               cTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAg                                                       <  1:1078440/150‑1 (MQ=255)
                                                                                                tGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAgg                                                      <  1:851812/150‑1 (MQ=255)
                                                                                                gaacagctcctggttgcgttctgggaaacactgtaccccaccctcgaagacgGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGcc                                                                                                                      >  1:998015‑M1/53‑86 (MQ=255)
                                                                                                 gCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGc                                                     >  1:1654095/1‑150 (MQ=255)
                                                                                                  ccccTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGcc                                                    >  2:2553686/1‑150 (MQ=255)
                                                                                                  ccccTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGcc                                                    >  1:757062/1‑150 (MQ=255)
                                                                                                   cccTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGt                                                                     <  1:2307007/132‑1 (MQ=255)
                                                                                                     cTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGa                                                                                                              >  2:2441653/1‑89 (MQ=255)
                                                                                                     cTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGa                                                                                                              <  1:2441653/89‑1 (MQ=255)
                                                                                                        gATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTAGTCCAGGCCGTCTTCGAGGGTGGGGGACAGTGTTGCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGCGGCCAAAggg                                              >  1:36799/1‑149 (MQ=255)
                                                                                                         aTAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTg                                             >  2:2088125/1‑150 (MQ=255)
                                                                                                         aTAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTg                                             >  2:2194869/1‑150 (MQ=255)
                                                                                                          tAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGAGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGa                                            <  1:2873918/150‑1 (MQ=255)
                                                                                                             tGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGc                                         >  2:2334809/1‑150 (MQ=255)
                                                                                                             tGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGc                                         >  1:851927/1‑150 (MQ=255)
                                                                                                               ggCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTcc                                                                                          <  1:1944773/99‑1 (MQ=255)
                                                                                                               ggCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTcc                                                                                          >  2:1944773/1‑99 (MQ=255)
                                                                                                                    gCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGaa                                  >  1:1211346/1‑150 (MQ=255)
                                                                                                                      cACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAgt                                <  2:738843/150‑1 (MQ=255)
                                                                                                                        ccGGCAATTTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTTAGCTCGAGGCCAAAGGTGATGCCCTCGAAgtgt                              >  1:1854055/1‑150 (MQ=255)
                                                                                                                         cGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGtt                             <  1:956902/150‑1 (MQ=255)
                                                                                                                           gCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGc                                                                        <  2:1341248/105‑1 (MQ=255)
                                                                                                                                       aGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGc               <  2:1211346/150‑1 (MQ=255)
                                                                                                                                         cctcgaagacaGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAgt                                                                                                <  2:728210‑M1/56‑1 (MQ=255)
                                                                                                                                         cctcgaagacaGCCAGGACAGTCGCGCCGCGCGCGCGTCCAGGCCGTCTTCGAGGGTGGGGTACAgt                                                                                                >  1:728210‑M1/12‑67 (MQ=255)
                                                                                                                                          gTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCg                                                                  >  2:913979/1‑96 (MQ=255)
                                                                                                                                          gTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCg                                                                  <  1:913979/96‑1 (MQ=255)
                                                                                                                                          gTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTg                      <  1:1271145/140‑1 (MQ=255)
                                                                                                                                          gTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGcccc            <  2:3011538/150‑1 (MQ=255)
                                                                                                                                           tGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGNCCGTCTTCGAGGGTGGGGTACAGTGTTTCCGAGAACGCAAACAGGAGCTGTTCGGTCAGCTCGAGGCCAAGGGTGATGCCTTCGAAGTGTTCACGCTCGGCCAGcccat           >  1:3072328/1‑148 (MQ=255)
                                                                                                                                            ggTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTc          <  1:1933617/150‑1 (MQ=255)
                                                                                                                                              tCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGGCGTCTTCGAGGGTGGGGTACAGTGTTTCGCAGAACGAAACCAGGAGCTGTTCGTTCAGCTCGAGGCCAGAGGTGATGCCTTCGAAGTGTACACGCTGGGCCACCCCCTTGc        >  2:1364957/1‑150 (MQ=255)
                                                                                                                                               cTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCa       <  2:851927/150‑1 (MQ=255)
                                                                                                                                               cTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGCCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCa       <  1:2334809/150‑1 (MQ=255)
                                                                                                                                                 tCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCaga     >  2:2870404/1‑150 (MQ=255)
                                                                                                                                                 tCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCaga     <  1:2867268/150‑1 (MQ=255)
                                                                                                                                                  cAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCagag    <  1:2667581/150‑1 (MQ=255)
                                                                                                                                                   aGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCAGAGc   <  1:2956349/150‑1 (MQ=255)
                                                                                                                                                    GCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCAGAGcc  <  2:2301626‑M1/150‑1 (MQ=255)
                                                                                                                                                    GCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCAGAGcc  <  2:1762347‑M1/150‑1 (MQ=255)
                                                                                                                                                    GCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCAGAGcc  <  1:1743501‑M1/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
TTGCCTTCGTTCAGTGCTGTCTGCATCGCCTTGGGGTTTTGCAAGGCGAGGTTCTCTACATGGCGTGATTCGTCATAGCGCAACACGCCAAAATTCTGCCCCTGGATAATGGGCAAGCCACCGGCAATGTCGGTGAGCGTGGTCTTCAGCCAGGACAGTCGCGCCGCGCGCTCGTCCAGGCCGTCTTCGAGGGTGGGGTACAGTGTTTCCCAGAACGCAACCAGGAGCTGTTCGGTCAGCTCGAGGCCAAAGGTGATGCCTTCGAAGTGTTCACGCTGGGCCAGCCCCTCGCAGAGCC  >  NC_002947/3477467‑3477764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.