| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4067814 = | 90 (0.790) | 5 (0.050) | 5/234 | NT | 5.5% | coding (1294/3108 nt) | mdtC | multidrug transporter membrane protein |
| ? | NC_002947 | 4067854 = | 84 (0.770) | coding (1254/3108 nt) | mdtC | multidrug transporter membrane protein | |||||
GGTTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4067967‑4067814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAACGTGCCCACCAGC > NC_002947/4067854‑4068001 GGTTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAG < 1:3003687/150‑1 TTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGT < 2:592664/150‑1 TTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTG < 1:1788367/150‑1 TCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACACCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGG < 2:2207779/150‑1 CGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGG > 1:2195430/1‑89 CGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGG < 2:2195430/89‑1 CCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATG > 1:2432885/1‑90 CCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATG < 2:2432885/90‑1 AGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGA > 1:2438130/1‑150 CCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATAT > 1:2721891/1‑57 CCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATAT < 2:2721891/57‑1 GGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAACGTGCCCACCAGC < 1:3018539/150‑1 GGTTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4067967‑4067814‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAACGTGCCCACCAGC > NC_002947/4067854‑4068001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |