New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4254384	93 (0.810)	6 (0.050)	5/240	NT	6.0%	coding (1788/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4254434	95 (0.840)					coding (1738/2253 nt)	PP_3728	two‑component system sensor histidine kinase/response regulator

GAGCAATGACCAGTCCATGTCTGCGCCAGCGCTGGCCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4254234‑4254384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcTCGCCGGGGCCGAACCGCCACAGTCGGATCCTGGCGCTGACGGCCGGCGTGCAAC  <  NC_002947/4254434‑4254380                                                                                                                                                                                                                GAGCAATGACCAGTCCATGTCTGCGCCAGCGCTGGCCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTG                                                          >  1:1959469/1‑150                           CAGCGCTGGCCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCTCGCCGGGGCCGAACCGCCACAGTC                                >  1:2434013/1‑150                                                         CAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCTCGCCGGGGCCGAACCGCCACAGTCGGATCCTGGCGCTGACGGCCGGCGTGCAAC  <  2:2434013/150‑1                                                                                     CCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCTCGCCGGGGCCGAACCGCCACAGTCGGATCCTGGCGCTGACGGCCGGCGTGC     <  1:895150/119‑1                                                                                     CCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCTCGCCGGGGCCGAACCGCCACAGTCGGATCCTGGCGCTGACGGCCGGCGTGC     >  2:895150/1‑119                                                                                                            CCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGGGCCGAACCGCCACAGTCGGATCCTGGCGCTGACGGCCGGCGTGCAAC  >  1:2058105/1‑99                                                                                                            CCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGCACGCCGGGGCCGAACCGCCACAGTCGGATCCTGGCGCTGACGGCCGGCGTGCAAC  <  2:2058105/99‑1                                                                                                                                                                                                                GAGCAATGACCAGTCCATGTCTGCGCCAGCGCTGGCCACTTCACCGGGCGCTACGTCAGCCAACGCCTTGCGCAGGCTGTCCAGCCGCAACGGCTTGGCCAGTACGCCCTGCATACCAGCGTCCAGATAACCCGCGACCTGGCCCGGTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4254234‑4254384 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcTCGCCGGGGCCGAACCGCCACAGTCGGATCCTGGCGCTGACGGCCGGCGTGCAAC  <  NC_002947/4254434‑4254380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.