New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4742647 =	89 (0.780)	5 (0.050)	5/230	NT	5.9%	coding (1390/1593 nt)	PP_4197	GntR family transcriptional regulator
	?	NC_002947	4742701 =	76 (0.700)					coding (1336/1593 nt)	PP_4197	GntR family transcriptional regulator

GCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4742799‑4742647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcaTCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACAGG  >  NC_002947/4742701‑4742847                                                                                                                                                                                                                                                                                                              GCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCAGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGG                                                                                                                                                        >  2:2933010/1‑150  CTACGACCGGCATCTGCGCTACATCCGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGT                                                                                                                                                       <  1:2009798/150‑1  CTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGTTCGGGT                                                                                                                                                       >  1:130440/1‑150                                                                                                        CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTC                                                       >  1:3019927/1‑144                                                                                                        CCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTC                                                       <  2:3019927/144‑1                                                                                                          GGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGAT                                                              >  1:477113/1‑135                                                                                                          GGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGAT                                                              <  2:477113/135‑1                                                                                                           GCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCATCTGGGTACCATCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCC                                              >  1:35145/1‑150                                                                                                                                                     GGTCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACA    <  2:2642182/150‑1                                                                                                                                                       TCATCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACAGG  <  1:1079314/150‑1                                                                                                                                                                                                                                                                                                              GCTACGACCGGCATCTGCGCTACATACGCCAGGAATATCGCAAGAACCTCAGTGCCTACCAGCTGGCAGTGCAGCAGCACTTCCCCGAGGGTACCCAGATGACCCGGCCGACAGGCGGCTTCATCCTCTGGGTGAGCCTGCCCGGTCGGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4742799‑4742647 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtcaTCTGGGTACCCTCGGGGAAGTGCTGCTGCACTGCCAGCTGGTAGGCACTGAGGTTCTTGCGATATTCCTGGCGTATGTAGCGCAGATGCCGGTCGTAGCCGCCATTTTCCAGGTAGGCTGCCACGCCCATCTGCGTCACGCTACAGG  >  NC_002947/4742701‑4742847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.