New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6032808 =	67 (0.590)	20 (0.240)	19/178	NT	40.9%	intergenic (+16/+120)	dppA‑IV/PP_5284	dipeptide transport protein/hypothetical protein
	?	NC_002947	6032890 =	9 (0.110)					intergenic (+98/+38)	dppA‑IV/PP_5284	dipeptide transport protein/hypothetical protein

ACATCATCATTGGTGATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6032989‑6032808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAA  >  NC_002947/6032890‑6033032                                                                                                                                                                                                                                                                                                                                        ACATCATCATTGGTGATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGC                                                                                                                                                                                 <  1:1433558/150‑1   ATCATCATTGGTGATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGC                                                                                                                                                                               >  2:737153/1‑150     CATCATTGGTGATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTA                                                                                                                                                                             <  1:1481528/150‑1        CATTGGTGATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCC                                                                                                                                                                          <  1:1426993/150‑1          TTGGTGATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCT                                                                                                                                                                        <  1:1389480/150‑1                  GGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGC                                                                                                                                                                <  1:2553179/150‑1                     GAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGG                                                                                                                                                             <  1:737153/150‑1                          GTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGATTGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGGTTTAC                                                                                                                                                        <  1:1871082/150‑1                          GTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTAC                                                                                                                                                        <  1:344125/150‑1                                GATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGG                                                                                                                                                             >  2:2143349/1‑139                                GATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCA‑GTTGACGCTACCCCTGTAGGAGCGGG                                                                                                                                                             <  1:2143349/139‑1                                                   ATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAG                                                                                                                                                                    <  1:639045/113‑1                                                   ATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAG                                                                                                                                                                    >  2:639045/1‑113                                                               GGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTAC                                                                                                                                                                            <  2:1452848/93‑1                                                               GGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTAC                                                                                                                                                                            >  1:1452848/1‑93                                                                                      GTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAG                                                                                                                                                                    <  2:1202367/78‑1                                                                                      GTCAGTACGGGCCCTTTCGCGGGCAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAG                                                                                                                                                                    >  1:1202367/1‑78                                                                                                          GGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTA                                                                                                                                                                     <  2:487307/57‑1                                                                                                          GGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTA                                                                                                                                                                     >  1:487307/1‑57                                                                                                                         TACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGATCA                                                                                                   <  1:3063242/108‑1                                                                                                                         TACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCA                                                                                                   >  2:3063242/1‑108                                                                                                                         TACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                 <  1:1079755/62‑1                                                                                                                         TACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAA                                                                                                                                                 >  2:1079755/1‑62                                                                                                                          ACAGGGGTAGCGTCA‑ACTGCCAAGCTGGCGCTACCCCTGTAGGAGCGGGGAGACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCGGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACCACGGCTCCCCATCACC                                                        >  2:2736349/1‑150                                                                                                                               GGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTC                                                                                                                      <  2:982879/83‑1                                                                                                                               GGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTC                                                                                                                      >  1:982879/1‑83                                                                                                                                GTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACACATGCTCGACCATCGACAACGGCTCCCCATCACCAATGAT                                                  >  1:438309/1‑150                                                                                                                                GTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTC                                                                 >  1:2677782/1‑135                                                                                                                                GTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTC                                                                 <  2:2677782/135‑1                                                                                                                                GTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATC                                                                                              >  1:2535330/1‑106                                                                                                                                GTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATC                                                                                              <  2:2535330/106‑1                                                                                                                                GTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGG                                                                                                                         <  1:2737494/79‑1                                                                                                                                GTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGG                                                                                                                         >  2:2737494/1‑79                                                                                                                                  AGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCA                                                                                                                   >  1:2612408/1‑83                                                                                                                                  AGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCA                                                                                                                   <  2:2612408/83‑1                                                                                                                                   GCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGAT                                               >  2:2582607/1‑150                                                                                                                                   GCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCA                                                                                                        <  1:2494232/93‑1                                                                                                                                   GCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCA                                                                                                        >  2:2494232/1‑93                                                                                                                                     GTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGT                                             >  1:1521156/1‑150                                                                                                                                            TGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGC                                                                                     <  2:1000842/104‑1                                                                                                                                            TGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGC                                                                                     >  1:1000842/1‑104                                                                                                                                                                ttgatgtGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAA                        >  2:1706397/8‑145                                                                                                                                                                ttgatgtGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAA                        <  1:1706397/138‑1                                                                                                                                                                      AGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCAGACATGCTCGACCATCGACAACGGCTCCCCATGACCAATGTGGATGTGATCCAGCACCCGCACATCAATCAACGCCAGC             >  1:2217115/1‑150                                                                                                                                                                      AGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGC             >  1:1500648/1‑150                                                                                                                                                                           GTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCG        >  2:1085915/1‑150                                                                                                                                                                           GTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATC                                                                            <  2:1679241/82‑1                                                                                                                                                                           GTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATC                                                                            >  1:1679241/1‑82                                                                                                                                                                                CCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCc   >  2:701607/1‑149                                                                                                                                                                                CCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATG                                                 >  2:2939538/1‑104                                                                                                                                                                                CCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATG                                                 <  1:2939538/104‑1                                                                                                                                                                                 CCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAA  >  2:1762092/1‑150                                                                                                                                                                                 CCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGAT                                               >  2:1477442/1‑105                                                                                                                                                                                 CCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGAT                                               <  1:1477442/105‑1                                                                                                                                                                                 CCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGATCCCCATCACCAATGATGATGTGATCCAGCGCCCGCACATCAATCAACGCCAGCCCCCGCTTCAA  >  1:2402280/1‑150                                                                                                                                                                                     GAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATC                                                                                              >  2:1429070/1‑54                                                                                                                                                                                     GAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATC                                                                                              <  1:1429070/54‑1                                                                                                                                                                                                                                                                                                                                        ACATCATCATTGGTGATGGGGAGCCGTTGTCGATGGTCGAGCATGGGTGGATTGTGGTCTGAGGGAGTACTGAGAGCCTTATAGGGTCAGTACGGGCCCTTTCGCGGGTAAACCCGCTCCTACAGGGGTAGCGTCA‑ACTGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6032989‑6032808 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAA  >  NC_002947/6032890‑6033032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.