| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6032808 = | 67 (0.590) | 20 (0.240) | 19/178 | NT | 40.9% | intergenic (+16/+120) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein |
| ? | NC_002947 | 6032890 = | 9 (0.110) | intergenic (+98/+38) | dppA‑IV/PP_5284 | dipeptide transport protein/hypothetical protein | |||||
GTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAA > NC_002947/6032815‑6033032 | GTAAACCCGCTCCTACAGGGGTAGCGTCAAC‑TGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCAATCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAAc < 1:1871082‑M1/150‑1 (MQ=255)GTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAAc < 1:344125‑M1/150‑1 (MQ=255) CCCGCTCCTACAGGGGTAGCGTCAAC‑TGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATc < 1:2143349‑M1/139‑1 (MQ=255) CCCGCTCCTACAGGGGTAGCGTCAAC‑TGCCAGGCTGGCGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATc > 2:2143349‑M1/1‑139 (MQ=255) CCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTc < 1:737153‑M1/150‑1 (MQ=255) GCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTcccc < 1:2553179‑M1/150‑1 (MQ=255) CTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTGCCCGCGAAAGGGCCCGTACTGAc > 1:1202367‑M1/1‑78 (MQ=255) CTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGAc < 2:1202367‑M1/78‑1 (MQ=255) CTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAAt < 1:639045‑M1/113‑1 (MQ=255) CTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAAt > 2:639045‑M1/1‑113 (MQ=255) tacaggggtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGATca < 1:3063242‑M2/46‑1 (MQ=255) tacaggggtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACca > 2:3063242‑M2/63‑108 (MQ=255) acaggggtagcgtcaactgccaagctggcgctacccctgtaggagcggggagacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCGGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACCACGGCTCCCCATCAcc > 2:2736349‑M2/62‑150 (MQ=255) AGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCaa < 1:1389480‑M1/150‑1 (MQ=255) GGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatg < 1:1426993‑M1/150‑1 (MQ=255) ggtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGctc > 1:982879‑M2/57‑83 (MQ=255) ggtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGctc < 2:982879‑M2/27‑1 (MQ=255) GTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTccc < 2:1452848‑M1/93‑1 (MQ=255) GTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTccc > 1:1452848‑M1/1‑93 (MQ=255) gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaGAGGCCGGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACACATGCTCGACCATCGACAACGGCTCCCCATCACCAatgat > 1:438309‑M2/56‑150 (MQ=255) gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAgg < 1:2737494‑M2/24‑1 (MQ=255) gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAgg > 2:2737494‑M2/56‑79 (MQ=255) gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATc > 1:2535330‑M2/56‑106 (MQ=255) gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATc < 2:2535330‑M2/51‑1 (MQ=255) gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTc > 1:2677782‑M2/56‑135 (MQ=255) gtagcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTc < 2:2677782‑M2/80‑1 (MQ=255) TAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatg < 1:1481528‑M1/150‑1 (MQ=255) agcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCa > 1:2612408‑M2/54‑83 (MQ=255) agcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCa < 2:2612408‑M2/30‑1 (MQ=255) GCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatgat > 2:737153‑M1/1‑150 (MQ=255) gcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaGAGGCCGGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatgat > 2:2582607‑M2/53‑150 (MQ=255) gcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCa < 1:2494232‑M2/41‑1 (MQ=255) gcgtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCa > 2:2494232‑M2/53‑93 (MQ=255) GCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGAtgt < 1:1433558‑M1/150‑1 (MQ=255) gtcaactgccaggctggcgctacccctgtaggagcgggtttacccgcgaaGAGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGAtgt > 1:1521156‑M2/51‑150 (MQ=255) cAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatgat > 1:1774037/1‑146 (MQ=255) cAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatgat < 2:1774037/146‑1 (MQ=255) aGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGAt > 1:2999008/1‑150 (MQ=255) aGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGAt < 2:1481528/150‑1 (MQ=255) gCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATc < 2:2553179/150‑1 (MQ=255) cTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAg < 1:2406242/75‑1 (MQ=255) cTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAg > 2:2406242/1‑75 (MQ=255) cTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCa > 2:785894/1‑150 (MQ=255) cTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCa < 2:2999008/150‑1 (MQ=255) tgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGc > 1:1000842‑M2/45‑104 (MQ=255) tgccaggctggcgctacccctgtaggagcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGc < 2:1000842‑M2/60‑1 (MQ=255) t‑tGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAg > 2:898751/1‑68 (MQ=255) t‑tGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAg < 1:898751/68‑1 (MQ=255) ttgatgtgcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACatcaa < 1:1706397‑M2/121‑1 (MQ=255) ttgatgtgcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACatcaa > 2:1706397‑M2/25‑145 (MQ=255) agcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCAGACATGCTCGACCATCGACAACGGCTCCCCATGACCAATGTGGATGTGATCCAGCACCCGCACATCAATCAACGCCAGc > 1:2217115‑M2/19‑150 (MQ=255) agcgggtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGc > 1:1500648‑M2/19‑150 (MQ=255) gtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATc > 1:1679241‑M2/14‑82 (MQ=255) gtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATc < 2:1679241‑M2/69‑1 (MQ=255) gtttacccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCg > 2:1085915‑M2/14‑150 (MQ=255) cccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatg < 1:2939538‑M2/96‑1 (MQ=255) cccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatg > 2:2939538‑M2/9‑104 (MQ=255) cccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTtcc > 2:701607‑M2/9‑149 (MQ=255) ccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatgat > 2:1477442‑M2/8‑105 (MQ=255) ccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAatgatgat < 1:1477442‑M2/98‑1 (MQ=255) ccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCaa > 2:1762092‑M2/8‑150 (MQ=255) ccgcgaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGATCCCCATCACCAATGATGATGTGATCCAGCGCCCGCACATCAATCAACGCCAGCCCCCGCTTCaa > 1:2402280‑M2/8‑150 (MQ=255) gaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATc > 2:1429070‑M2/4‑54 (MQ=255) gaaAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATc < 1:1429070‑M2/51‑1 (MQ=255) | GTAAACCCGCTCCTACAGGGGTAGCGCCAGCCTGGCAGT‑TGACGCTACCCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCCGTACTGACCCTATAAGGCTCTCAGTACTCCCTCAGACCACAATCCACCCATGCTCGACCATCGACAACGGCTCCCCATCACCAATGATGATGTGATCCAGCACCCGCACATCAATCAACGCCAGCCCCCGCTTCAA > NC_002947/6032815‑6033032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |