| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5035308 | 0 (0.000) | 6 (0.060) | 6/232 | NT | 100% | coding (1300/1536 nt) | PP_4439 | transposase |
| ? | NC_002947 | = 5038236 | NA (NA) | coding (1280/1536 nt) | PP_4443 | transposase | |||||
TGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCTGGGCACTCGGGCGCTCGAACTGGCTGTTTGCCGGGTCGCTACGCAGTGGTAAACGGGCCGCTGCAATCATGAGCCTGATCCAGTCGGCGCGTATGAATGGGCATGATCCGTATGC > NC_002947/5035162‑5035456 | tGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGtcc < 2:2164015‑M1/150‑4 (MQ=255) ccTGGACGATGGGGCTGTGCCCATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtaatcgagggctttagccgtggctgatccgtt < 1:2913280‑M1/97‑72 (MQ=255) ccTGGACGATGGGGCTGTGCCCATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtaatcgagggctttagccgtggctgatccgtt > 2:2913280‑M1/1‑26 (MQ=255) tGGACGATGGGGCTGTGCCCATCGtccaggtagcgcgtcagcgctac < 2:416672‑M1/47‑24 (MQ=255) tGGACGATGGGGCTGTGCCCATCGtccaggtagcgcgtcagcgctac > 1:416672‑M1/1‑24 (MQ=255) aCGATGGGGCTGTGCCCATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtaatcgagggctttagccgtggctgatccgttg > 1:2444028‑M1/1‑21 (MQ=255) aCGATGGGGCTGTGCCCATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtaatcgagggctttagccgtggctgatccgttg < 2:2444028‑M1/93‑73 (MQ=255) cATCGtccaggtagcgcgtcagcgctacgcagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgta > 2:188476‑M1/1‑5 (MQ=255) cATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgta > 1:2286435‑M1/1‑5 (MQ=255) cATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgta > 2:1372745‑M1/1‑5 (MQ=255) cATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgg < 2:1029305‑M1/95‑91 (MQ=255) cATCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgg > 1:1029305‑M1/1‑5 (MQ=255) aTCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgtat > 1:724678‑M1/1‑4 (MQ=255) tCGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgtatt < 1:2787884‑M1/150‑148 (MQ=255) cGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgtattc < 2:1351440‑M1/150‑149 (MQ=255) cGtccaggtagcgcgtcagcgctacccagcgtttcaggctgtagtcgagggctttggctgtggctgatccgttgggcaccaggtcacgctgggccaacatccactcatgcagtgttttgctgatcggtaccgccagttcctgccgtattc < 1:667628‑M1/150‑149 (MQ=255) gtccaggtagcgcgtcagcgctacccagcgtttca < 1:418823‑M1/35‑35 (MQ=255) gtccaggtagcgcgtcagcgctacccagcgtttca > 2:418823‑M1/1‑1 (MQ=255) | TGCCAATCCTCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACTTGGTGCCCAACGGATCAGCCACGGCTAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAGAACCAGATACGGCCCTGGGCACTCGGGCGCTCGAACTGGCTGTTTGCCGGGTCGCTACGCAGTGGTAAACGGGCCGCTGCAATCATGAGCCTGATCCAGTCGGCGCGTATGAATGGGCATGATCCGTATGC > NC_002947/5035162‑5035456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |