New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 50353080 (0.000)6 (0.060) 6/232 NT 100% coding (1300/1536 nt) PP_4439 transposase
?NC_002947 = 5038236 NA (NA)coding (1280/1536 nt) PP_4443 transposase

AACTGGCGGTACCGATCAGCAAAACACTGCATGAGTGGATGTTGGCCCAGCGTGACCTGGTGCCCAACGGATCAGCCACAGCCAAAGCCCTCGACTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGATCTGTGCCCATCGACAACAATCAGGTCGAGAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTGTTTGCCGGGTCGCTGCGCAGT  >  NC_002947/5038101‑5038336
                                                                                                                                       |                                                                                                    
aaatGGCGGTACCGATCAGCAAAACACTGCATGAGTGGATGTTGGCCCAGCGTGACCTGGTGCCCAACGGATCAGCCACAGCCAAAGCCCTCGACTACAGCCTGGAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGATCTGTGc                                                                                        <  2:2541723/147‑1 (MQ=1)
                                                                                      gcgcTCCACGACAGCCTTAAACTCTGTGTAGCGCTGACGCGCTACCTGGACGATGGATCTGTGCCCATCGACAACAATCAGGTCGAGAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTGTTTGCCGGGTCGCTGCGCaat  <  2:2478227/147‑3 (MQ=1)
                                                                                                                                       |                                                                                                    
AACTGGCGGTACCGATCAGCAAAACACTGCATGAGTGGATGTTGGCCCAGCGTGACCTGGTGCCCAACGGATCAGCCACAGCCAAAGCCCTCGACTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGATCTGTGCCCATCGACAACAATCAGGTCGAGAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTGTTTGCCGGGTCGCTGCGCAGT  >  NC_002947/5038101‑5038336

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.