New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	15797 =	47 (0.790)	4 (0.070)	4/228	NT	7.9%	intergenic (+47/‑792)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein
	?	NC_002947	15834 =	48 (0.840)					intergenic (+84/‑755)	gyrB/PP_5421	DNA gyrase subunit B/hypothetical protein

GCGCCCCATCAAATCACTTCCTCAAATCCCCCCATCTGCATCATTTTCCAATGAGCGGAGTAGGGCGCCCCGGCAGGAATTCCAGGCAAAAAAAAGCCCGCGAAGGCGGGCTTGATGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/15951‑15797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcaCCATCAAGCCCGCCTTCGCGGGC‑TTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCTGAGAGGGTCGGCGGGCGGAT  >  NC_002947/15834‑15981                                                                                                                                                                                                                                                                                                                  GCGCCCCATCAAATCACTTCCTCAAATCCCCCCATCTGCATCATTTTCCAATGAGCGGAGTAGGGCGCCCCGGCAGGAATTCCAGGCAAAAAAAAGCCCGCGAAGGCGGGCTTGATGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCC                                                                                                                                                            <  1:1113060/150‑1                                                         GGAGTAGGGCGCCCCGGCAGGAATTCCAGGCAAAAAAAAGCCCGCGAAGGCGGGCTTGATGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTC                                                                                                                                                        <  1:786675/98‑1                                                         GGAGTAGGGCGCCCCGGCAGGAATTCCAGGCAAAAAAAAGCCCGCGAAGGCGGGCTTGATGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTC                                                                                                                                                        >  2:786675/1‑98                                                                        GGCAGGAATTCCAGGCAAAAAAAAGCCCGCGAAGGCGGGCTTGATGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCG                                                                                                                                                           >  1:157467/1‑80                                                                        GGCAGGAATTCCAGGCAAAAAAAAGCCCGCGAAGGCGGGCTTGATGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCG                                                                                                                                                           <  2:157467/80‑1                                                                                                                    TGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGG                                                             >  1:13397/1‑130                                                                                                                    TGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGG                                                             <  2:13397/130‑1                                                                                                                       TGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGC‑TTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGG                                     >  2:718313/1‑150                                                                                                                                      ATGGTTGAAGCCCGGCCGGTCACCATCAAGCCCGCCTTCGCGGGC‑TTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCT                      <  1:718313/150‑1                                                                                                                                                          CACCATCAAGCCCGCCTTCGCGGGC‑TTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCTGAGAGGGTCGGCGGGCGGAT  <  1:416116/150‑1                                                                                                                                                                                                                                                                                                                  GCGCCCCATCAAATCACTTCCTCAAATCCCCCCATCTGCATCATTTTCCAATGAGCGGAGTAGGGCGCCCCGGCAGGAATTCCAGGCAAAAAAAAGCCCGCGAAGGCGGGCTTGATGGTGACCGACAGGGGCCATGGTTGAAGCCCGGCCGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/15951‑15797 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtcaCCATCAAGCCCGCCTTCGCGGGC‑TTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATGGGGCGCTGGAAGTGCTGAGAGGGTCGGCGGGCGGAT  >  NC_002947/15834‑15981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.