New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 15797 = | 47 (0.790) | 4 (0.070) | 4/228 | NT | 7.9% | intergenic (+47/‑792) | gyrB/PP_5421 | DNA gyrase subunit B/hypothetical protein |
? | NC_002947 | 15834 = | 48 (0.840) | intergenic (+84/‑755) | gyrB/PP_5421 | DNA gyrase subunit B/hypothetical protein |
GCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATG > NC_002947/15649‑15945 | gccgcTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATg > 2:1482160/1‑150 (MQ=255) atccgcccgccgaccctctcagcacttccagcgccccatcaaatcacttcctcaaatccccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaagcccgcgaaggcgggcttgatggTg < 1:416116‑M1/2‑1 (MQ=255) cAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggccgg > 1:404698/1‑150 (MQ=255) cAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggccgg > 1:1503183/1‑150 (MQ=255) agcacttccagcgccccatcaaatcacttcctcaaatccccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCAt < 1:718313‑M1/22‑1 (MQ=255) acCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATg < 1:60114/150‑1 (MQ=255) aTGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGGGTAGGTTCACAGAAGAGCTGCACGCTTTCACAAATAGTTTACCATCCGTGCTTCAACCATGGCCCCt > 2:1162996/1‑150 (MQ=255) gATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCCAACGTGGACTAATGATCAGGTGAAAAGGTTTACAGATTGGCGGTACGCGGTTACAAAGAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGt > 2:1004207/1‑150 (MQ=255) tGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCa > 1:71325/1‑150 (MQ=255) ccatcaaatcacttcctcaaatccccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCa > 2:718313‑M1/114‑150 (MQ=255) cgtGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCtt > 2:1313841/1‑150 (MQ=255) gACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTcgc > 1:311896/1‑150 (MQ=255) cTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCgg < 2:71325/150‑1 (MQ=255) tCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGc < 1:1482160/150‑1 (MQ=255) ccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCa > 1:13397‑M1/91‑130 (MQ=255) ccccatctgcatcattttccaatgagcggagtagggcgccccggcaggaattccaggcaaaaaaaaagcccgcgaaggcgggcttgatggTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCa < 2:13397‑M1/40‑1 (MQ=255) aGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCtttttttt < 1:1199144/150‑1 (MQ=255) tAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGc > 2:1181100/1‑150 (MQ=255) tAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGc < 1:1181100/150‑1 (MQ=255) cgcgCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTg > 2:1115475/1‑150 (MQ=255) tCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg > 1:94454/1‑94 (MQ=255) tCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg < 2:94454/94‑1 (MQ=255) tCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTcc < 1:271596/150‑1 (MQ=255) cGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCt < 1:1115475/150‑1 (MQ=255) gtgtCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggcc > 2:110408/1‑76 (MQ=255) gtgtCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGAccggcc < 1:110408/76‑1 (MQ=255) gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg > 2:1232646/1‑86 (MQ=255) gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATgg < 1:1232646/86‑1 (MQ=255) gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTc > 1:302703/1‑141 (MQ=255) gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTc < 2:302703/141‑1 (MQ=255) gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTTCCgggg > 1:588278/1‑150 (MQ=255) gAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCgggg < 1:1077312/150‑1 (MQ=255) aaCCTGGACTTCTGATCAGGTGTGTAGGTAGACAGTGAAGGTGCCGGGCTGGAGGGTAACAGCAGCGGCGGTGCGGCAACCATGGCCCCTGTTGGTCACCATTAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGgc > 1:29961/1‑150 (MQ=255) ttCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTc < 1:1313841/150‑1 (MQ=255) cTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCg < 1:561863/150‑1 (MQ=255) tGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAAACCGCCATCGCTTTCTTGGCTGTTCCGGTGATTCCTGCCGGGGCGCCCTACTCCGc > 1:1599781/1‑150 (MQ=255) aTCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTCAACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTc < 1:1162996/150‑1 (MQ=255) gtgtgtAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCAtt > 1:1642454/1‑148 (MQ=255) gtgtgtAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCAtt < 2:1642454/148‑1 (MQ=255) gtgtgtAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTgg > 2:845463/1‑150 (MQ=255) gTTCACAGAAAAGCTTCACGCTTTCACCAATAGATGATCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAatgat < 2:588278/150‑1 (MQ=255) ttCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAatgatg > 1:1027337/1‑150 (MQ=255) acaGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAg > 2:416116/1‑150 (MQ=255) aCGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTg > 2:612946/1‑150 (MQ=255) cGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGa < 2:851610/150‑1 (MQ=255) gCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCAGCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATGTGAg > 1:234665/1‑150 (MQ=255) gCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAg > 1:786093/1‑150 (MQ=255) tttCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGa > 2:1160440/1‑150 (MQ=255) tttCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGa > 2:386535/1‑150 (MQ=255) ttCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGCCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGaa < 1:1004207/150‑1 (MQ=255) aaaTAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCggg < 1:854007/94‑1 (MQ=255) aaaTAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCggg > 2:854007/1‑94 (MQ=255) aaaTAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGAt > 2:940654/1‑150 (MQ=255) aTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATg < 2:1027337/150‑1 (MQ=255) aTGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATg > 1:923134/1‑150 (MQ=255) | GCCGCTGACCAGATCTTCAACACCCTGATGGGTGATGCGGTCGAGCCGCGTCGTGACTTCATCGAAAGTAACGCGCTGTCGGTGTCGAACCTGGACTTCTGATCAGGTGTGTAGGTTCACAGAAAAGCTGCACGCTTTCACAAATAGATGACCGGCCGGGCTTCAACCATGGCCCCTGTCGGTCACCATCAAGCCCGCCTTCGCGGGCTTTTTTTTGCCTGGAATTCCTGCCGGGGCGCCCTACTCCGCTCATTGGAAAATGATGCAGATGGGGGGATTTGAGGAAGTGATTTGATG > NC_002947/15649‑15945 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |