New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1440042	28 (0.470)	6 (0.110)	6/226	NT	14.6%	intergenic (‑366/‑293)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 5453079	44 (0.780)					intergenic (+44/‑311)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase

AAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1439891‑1440042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAATCAGACGGTTTTTGCAATACGCCCTGCCAGCAACGCCCAGCCCAGCAGCAATGCACAGACAATCGCCAGCGGCCATGAGCGCCATTGCAGGTAAGGCGTCAGCT  <  NC_002947/5453079‑5452932                                                                                                                                                                                                                                                                                                              AAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCA                                                                                                                                                        >  2:877861/1‑150                                              GCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGACAGCGCAGCCCGGAAG                                                                                                                                               <  1:791324/114‑1                                              GCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGACAGCGCAGCCCGGAAG                                                                                                                                               >  2:791324/1‑114                                                                                                                           CAGCCCTTCCGGGCTGCGCTGTCGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAA                                                                                                          <  1:179419/74‑1                                                                                                                           CAGCCCTTCCGGGCTGCGCTGTCGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAA                                                                                                          >  2:179419/1‑74                                                                                                                                 TTCCGGGCTGCGCTGTCGCGCAGCCCGGCAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAAT                                                                                                         >  1:576583/1‑69                                                                                                                                 TTCCGGGCTGCGCTGTCGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAAT                                                                                                         <  2:576583/69‑1                                                                                                                                                     CAGCCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAATCAGACGGTTTTTGCAATACGCCCTGCCAGCAACGCCCAGCCCAGCAGCAATGCACAGACAATCGCCAGCGGCCATGAGCGCCATTGCAGGTAAGGCGTCAG    >  2:595189/1‑150                                                                                                                                                      AGCCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAATCAGACGGTTTTTGCAATACGCCCTGCCAGCAACGCCCAGCCCAGCAGCAATGCACAGACAATCGCCAGCGGCCATGAGCGCCATTGCAGGTAAGGCGTCAGC   <  2:688515/150‑1                                                                                                                                                       GCCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAATCAGACGGTTTTTGCAATACGCCCTGCCAGCAACGCCCAGCCCAGCAGCAATGCACAGACAATCGCCAGCGGCCATGAGCGCCATTGCAGGTAAGGCGTCAGCT  <  2:1509687/150‑1                                                                                                                                                                                                                                                                                                              AAAGCCATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1439891‑1440042 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcagcCCGGAAGGGCTGGGTGATCTCCTACAGTGGTCGCGTATCGTCAATCAGACGGTTTTTGCAATACGCCCTGCCAGCAACGCCCAGCCCAGCAGCAATGCACAGACAATCGCCAGCGGCCATGAGCGCCATTGCAGGTAAGGCGTCAGCT  <  NC_002947/5453079‑5452932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.