New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1440042	28 (0.470)	6 (0.110)	6/226	NT	14.6%	intergenic (‑366/‑293)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 5453079	44 (0.780)					intergenic (+44/‑311)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase

AGCTGACGCCTTACCTGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGG  >  NC_002947/5452932‑5453197                                                                                                                                                     |                                                                                                                       aGCTGACGCCTTACCTGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGgc                                                                                                                      <  2:1509687‑M2/150‑3 (MQ=255)  gCTGACGCCTTACCTGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGgct                                                                                                                     <  2:688515‑M2/150‑4 (MQ=255)   cTGACGCCTTACCTGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGgctg                                                                                                                    >  2:595189‑M2/1‑146 (MQ=255)        gCCTTACCTGCAATGTCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTg                                                                                                               >  2:1310476/1‑150 (MQ=255)          cTTACCTGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCTACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTc                                                                                                             <  2:101823/150‑1 (MQ=255)           ttACCTGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTcg                                                                                                            >  2:1022511/1‑150 (MQ=255)                tGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCgcag                                                                                                       <  1:688515/150‑1 (MQ=255)                 gCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCgcagc                                                                                                      <  1:1022511/150‑1 (MQ=255)                     tGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCgcagagatc                                                                                                  <  1:1550001/150‑6 (MQ=255)                         gcTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGa                                                                                              <  2:1099500/150‑1 (MQ=255)                          cTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAg                                                                                             <  2:1461032/150‑1 (MQ=255)                                  cGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACgg                                                                                     >  2:652937/1‑150 (MQ=255)                                     tGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt                                                                                  <  2:684710/150‑1 (MQ=255)                                     tGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt                                                                                  <  2:1265110/150‑1 (MQ=255)                                      ggCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGACAGGGCGTATTGCAAAAACCGTCTGATTGAACAAACGCGACCACTGTATGGGAG‑CATCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTc                                                                                 <  1:199146/150‑1 (MQ=37)                                       gCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCa                                                                                >  1:570696/1‑150 (MQ=255)                                        cGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAg                                                                               <  2:788842/150‑1 (MQ=255)                                        cGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAg                                                                               <  1:652937/150‑1 (MQ=255)                                         gATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCAGTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCgca                                                                                                        >  1:768030/1‑124 (MQ=255)                                         gATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCgca                                                                                                        <  2:768030/124‑1 (MQ=255)                                              tCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGc                                                                         >  2:1522187/1‑150 (MQ=255)                                                 gtgCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGc                                                                      >  2:539303/1‑150 (MQ=255)                                                         ctgctgGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGa                                                              <  2:123959/150‑1 (MQ=255)                                                                  tgggcGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGaa                                                     >  1:1482711/1‑150 (MQ=255)                                                                   gggcGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCCGTTCCGCAGAGACGCTGACATGTGGaaa                                                    <  2:1179133/150‑1 (MQ=255)                                                                   gggcGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGaaa                                                    >  1:376212/1‑150 (MQ=255)                                                                     gcGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGaaaaa                                                  <  1:228927/150‑1 (MQ=255)                                                                            tGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGACTGCGCTTTCGCGCATCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGATATTTTGAAAAAGAAAAgg                                           >  1:498135/1‑150 (MQ=255)                                                                              gCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCg                                         <  1:1522187/150‑1 (MQ=255)                                                                                  ggCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAg                                                                                             <  2:1378406/94‑1 (MQ=255)                                                                                  ggCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAg                                                                                             >  1:1378406/1‑94 (MQ=255)                                                                                     gTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGcc                                  >  1:590406/1‑150 (MQ=255)                                                                                        ttGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTa                                                                                        >  2:171721/1‑93 (MQ=255)                                                                                        ttGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTa                                                                                        <  1:171721/93‑1 (MQ=255)                                                                                        ttGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCgg                               >  2:1296216/1‑150 (MQ=255)                                                                                                   gTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgcc                    >  1:806682/1‑150 (MQ=255)                                                                                                    tCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgccg                   >  2:851505/1‑150 (MQ=255)                                                                                                    tCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgccg                   >  1:128651/1‑150 (MQ=255)                                                                                                     cTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgccgc                  <  2:806682/150‑1 (MQ=255)                                                                                                        aTTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGgctgcgcgacagcgcagcccggaa                                                                                                <  2:576583‑M2/69‑25 (MQ=255)                                                                                                        aTTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTGCCGGgctgcgcgacagcgcagcccggaa                                                                                                >  1:576583‑M2/1‑45 (MQ=255)                                                                                                         ttGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGgctgcgcgacagcgcagcccggaagggctg                                                                                          >  2:179419‑M2/1‑44 (MQ=255)                                                                                                         ttGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGgctgcgcgacagcgcagcccggaagggctg                                                                                          <  1:179419‑M2/74‑31 (MQ=255)                                                                                                           gACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTg            <  2:485333/150‑1 (MQ=255)                                                                                                            cgatctcgcgACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGc           <  2:29786/144‑1 (MQ=25)                                                                                                             cGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAg                            <  1:1182840/132‑1 (MQ=40)                                                                                                             cGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAg                            >  2:1182840/1‑132 (MQ=40)                                                                                                              gATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCgg                                        >  2:679714/1‑119 (MQ=255)                                                                                                              gATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCgg                                        <  1:679714/119‑1 (MQ=255)                                                                                                                tACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCACGCAGCAAACACGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTg       >  1:34810/1‑150 (MQ=255)                                                                                                                  cgcgACCACTGTAGGAGAT‑CACCCATCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGtt     <  1:539303/150‑1 (MQ=25)                                                                                                                   gcgACCACTGTAGGCGCTACACCC‑GCCCTTCCCGGCTACGCGGACGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTa    <  2:590406/150‑1 (MQ=11)                                                                                                                    cgACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAg   <  1:1509687/150‑1 (MQ=34)                                                                                                                     gACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTAAAAAGGAAAAGGCTTTGGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAgg  <  1:851505/150‑1 (MQ=11)                                                                                                                                               cTTCCGGgctgcgctgtcgcgcagcccggaagggctgggtgatctcctacagggcccccacagatttcgaattctgcgccgtacctgtaggagcgggttcacccgcgaaagggc             >  2:791324‑M2/1‑7 (MQ=255)                                                                                                                                               cTTCCGGgctgcgctgtcgcgcagcccggaagggctgggtgatctcctacagggcccccacagatttcgaattctgcgccgtacctgtaggagcgggttcacccgcgaaagggc             <  1:791324‑M2/114‑108 (MQ=255)                                                                                                                                                     |                                                                                                                       AGCTGACGCCTTACCTGCAATGGCGCTCATGGCCGCTGGCGATTGTCTGTGCATTGCTGCTGGGCTGGGCGTTGCTGGCAGGGCGTATTGCAAAAACCGTCTGATTGACGATACGCGACCACTGTAGGAGAT‑CACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGG  >  NC_002947/5452932‑5453197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.