New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1440042	28 (0.470)	6 (0.110)	6/226	NT	14.6%	intergenic (‑366/‑293)	yveA/PP_1260	aspartate‑proton symporter/transposase
	?	NC_002947	= 5453079	44 (0.780)					intergenic (+44/‑311)	lnt/PP_4791	apolipoprotein N‑acyltransferase/transposase

ATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTG  >  NC_002947/1439897‑1440190                                                                                                                                                  |                                                                                                                                                     aTACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAAc                                                                                                                                                  >  2:1144579/1‑150 (MQ=255) aTACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGAGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCaaaa                                                                                                                                                  >  1:1325761/1‑149 (MQ=255)       gATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAgg                                                                                                                                            >  2:1200975/1‑150 (MQ=255)        aTAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGgt                                                                                                                                           <  1:921913/150‑1 (MQ=255)                 tgcgagaTGCAGGGCTAGTGCCGGCCCTTGCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt                                                                                                                                  <  2:1325761/147‑1 (MQ=255)                     agaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGt                                                                                                                              >  1:1140982/1‑150 (MQ=255)                      gaTGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGtt                                                                                                                             <  1:896642/150‑1 (MQ=255)                       aagCAGTGCGAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTc                                                                                                                            >  2:63023/3‑150 (MQ=255)                                        gCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGACAGCGCAGCccggaag                                                                                                                                               >  2:791324‑M1/1‑107 (MQ=255)                                        gCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCGACAGCGCAGCccggaag                                                                                                                                               <  1:791324‑M1/114‑8 (MQ=255)                                          ccTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACAttt                                                                                                         <  2:1197090/150‑1 (MQ=255)                                            tttCGCGGGTGAACCCGCTCCTACCGGTACGGCGCACAAGGCTCAATGTGGGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTg                                                                                                       >  1:615868/1‑150 (MQ=17)                                                    gTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaa                                                                                               >  1:628536/1‑150 (MQ=255)                                                     tGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAaaaagaaa                                                                                              >  2:1563408/1‑150 (MQ=255)                                                         cccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGc                                                                                          >  2:59060/1‑150 (MQ=255)                                                         cccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGc                                                                                          >  2:922304/1‑150 (MQ=255)                                                          ccGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCg                                                                                         >  2:1022883/1‑150 (MQ=255)                                                            gCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGGCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGt                                                                                       >  1:1572956/1‑150 (MQ=255)                                                                      gTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt                                                                                                                                  >  1:563137/1‑97 (MQ=255)                                                                      gTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt                                                                                                                                  <  2:563137/97‑1 (MQ=255)                                                                        aCGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAgg                                                                           <  1:1144579/150‑1 (MQ=255)                                                                              cAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgc                                                                     <  1:63023/150‑1 (MQ=255)                                                                                 aaTTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAgccgc                                                                  >  1:1115794/1‑150 (MQ=255)                                                                                   ttCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCt                                                                >  2:1622993/1‑150 (MQ=255)                                                                                   ttCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCt                                                                >  2:762440/1‑150 (MQ=255)                                                                                     cGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTTTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCg                                                                                         <  1:41313/123‑1 (MQ=255)                                                                                     cGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCg                                                                                         >  2:41313/1‑123 (MQ=255)                                                                                       aaaTCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTg                                                            >  1:1359235/1‑150 (MQ=39)                                                                                         aTCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt                                                                                                                                  >  2:823663/1‑78 (MQ=255)                                                                                         aTCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCtt                                                                                                                                  <  1:823663/78‑1 (MQ=255)                                                                                         aTCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCttttctt                                                          <  1:1022883/150‑4 (MQ=38)                                                                                                 gggCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAgg                                                  <  1:1622993/150‑1 (MQ=31)                                                                                                                     cAGCCCTTCCGGGCTGCGCTGTCGCGCAGCccggaagggctgggtgatctcctacagtggtcgcgtatcgtcaa                                                                                                          <  1:179419‑M1/74‑45 (MQ=255)                                                                                                                     cAGCCCTTCCGGGCTGCGCTGTCGCGCAGCccggaagggctgggtgatctcctacagtggtcgcgtatcgtcaa                                                                                                          >  2:179419‑M1/1‑30 (MQ=255)                                                                                                                           ttCCGGGCTGCGCTGTCGCGCAGCccggcagggctgggtgatctcctacagtggtcgcgtatcgtcaat                                                                                                         >  1:576583‑M1/1‑24 (MQ=255)                                                                                                                           ttCCGGGCTGCGCTGTCGCGCAGCccggaagggctgggtgatctcctacagtggtcgcgtatcgtcaat                                                                                                         <  2:576583‑M1/69‑46 (MQ=255)                                                                                                                                               cAGCccggaagggctgggtgatctcctacagtggtcgcgtatcgtcaatcagacggtttttgcaatacgccctgccagcaacgcccagcccagcagcaatgcacagacaatcgccagcggccatgagcgccattgcaggtaaggcgtcag    >  2:595189‑M1/1‑4 (MQ=255)                                                                                                                                                aGCccggaagggctgggtgatctcctacagtggtcgcgtatcgtcaatcagacggtttttgcaatacgccctgccagcaacgcccagcccagcagcaatgcacagacaatcgccagcggccatgagcgccattgcaggtaaggcgtcagc   <  2:688515‑M1/150‑148 (MQ=255)                                                                                                                                                 gCccggaagggctgggtgatctcctacagtggtcgcgtatcgtcaatcagacggtttttgcaatacgccctgccagcaacgcccagcccagcagcaatgcacagacaatcgccagcggccatgagcgccattgcaggtaaggcgtcagct  <  2:1509687‑M1/150‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                     ATACCGGATAAGGGTTTGAGAGATGCAGTGCTAGTGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAGGTACGGCGCAGAATTCGAAATCTGTGGGGGCCCTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTG  >  NC_002947/1439897‑1440190

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.