| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1622527 = | 53 (0.890) | 16 (0.310) | 13/204 | NT | 28.6% | intergenic (+7/+59) | PP_1421/PP_1422 | sensor histidine kinase TctE/hypothetical protein |
| ? | NC_002947 | 1622577 = | 35 (0.690) | intergenic (+57/+9) | PP_1421/PP_1422 | sensor histidine kinase TctE/hypothetical protein | |||||
TCACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1622691‑1622527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaggggcgacacaggcTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCTGC > NC_002947/1622577‑1622724 TCACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAA > 2:874873/1‑150 CACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAA < 1:1396741/150‑1 CCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAG < 1:1464350/149‑1 CCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAG > 2:1464350/1‑149 GGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTCTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGcg < 2:265084/150‑3 GCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC > 1:1422366/1‑150 GCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGC < 2:607710/150‑1 CCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCG < 2:825228/150‑1 ATTGGCTGCGTTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGAC > 2:151873/1‑150 GCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGACGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAG > 1:1590627/1‑150 GATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGC < 2:1428781/109‑1 GATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGC > 1:1428781/1‑109 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAAC < 2:952442/108‑1 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAAC > 1:952442/1‑108 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATC < 2:941926/86‑1 GCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATC > 1:941926/1‑86 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGAGACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGG < 2:1246966/109‑1 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCC > 1:65200/1‑150 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAA > 2:1083059/1‑145 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAA < 1:1083059/145‑1 CCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGG > 1:1246966/1‑109 CCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGG > 1:92070/1‑150 CTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTC > 1:189343/1‑62 CTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTC < 2:189343/62‑1 GCGGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGC > 2:1119139/1‑150 GGGTGAGCCCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATAGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCC > 1:1368441/1‑150 CCATGAAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATAGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGAC < 2:1368441/150‑1 AAAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATG > 2:715921/1‑150 AAGGGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGC > 2:94083/1‑150 GGGCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGC > 1:980137/1‑150 GCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGG < 2:1628373/150‑1 GCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGAC > 1:403756/1‑127 GCGACACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGAC < 2:403756/127‑1 CACAGGCTGGTACAGCTCGGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGA > 1:213500/1‑150 ACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACG > 1:858142/1‑74 ACAGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACG < 2:858142/74‑1 AGGCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCT > 1:1449725/1‑150 GCTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCTGC > 1:1473261/1‑150 TCACCGGCCATTGGCTGCGCTGCCGGCGTACCGCCATCTGGGGTTGCCGTTTGGCACCGAGCTGGAGGTCGATGAACTGCTGGAGGCGCGGAGCATGTTGCGCTGAGCTGTACCAGCCTGTGTCGCCCCTTTCGCGGGTGAGCCCATGAAAGGGGCGACACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1622691‑1622527‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaaggggcgacacaggcTGGTACAGCTCAGCGCAACATGCTCCGCGCCTCCAGCAGTTCATCGACCTCCAGCTCGGTGCCAAACGGCAACCCCAGATGGCGGTACGCCGGCAGCGCAGCCAATGGCCGGTGACGCCCGCGCTGACTGATGCAGCGGGCGATCTGC > NC_002947/1622577‑1622724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |