New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2871070	53 (0.890)	5 (0.090)	5/226	NT	9.4%	intergenic (+334/‑196)	PP_2522/PP_2524	transposase/HD domain‑containing protein
	?	NC_002947	= 2871087	47 (0.830)					intergenic (+351/‑179)	PP_2522/PP_2524	transposase/HD domain‑containing protein

GTTCTGATCAGCGAACTCAGGGGCAATCAGGCGTCGCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2870915‑2871070 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgGGGTGAGACATCACCGACAGCACCTTG  <  NC_002947/2871087‑2871061                                                                                                                                                                                         GTTCTGATCAGCGAACTCAGGGGCAATCAGGCGTCGCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATATCGCACCTGCTGTCAGCAAG                                   >  2:910928/1‑150      GATCAGCGAACTCAGGGGCAATCAGGCGTCGCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCT                              >  2:906700/1‑150                              GGCGTCGCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGGGGTGAGACATCACCGACAGCAC      <  2:874780/150‑1                                                                                               CCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGGGGTGAGACATCACCGACAG         <  1:1054372/82‑1                                                                                               CCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGGGGTGAGACATCACCGACAG         >  2:1054372/1‑82                                                                                                  GCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGGGGTGAGACATCACCGACAGCACCTTG  <  1:955426/86‑1                                                                                                  GCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGGGGTGAGACATCACCGACAGCACCTTG  >  2:955426/1‑86                                                                                                                                                                                         GTTCTGATCAGCGAACTCAGGGGCAATCAGGCGTCGCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2870915‑2871070 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgctgGGGTGAGACATCACCGACAGCACCTTG  <  NC_002947/2871087‑2871061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.