New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2871070	53 (0.890)	5 (0.090)	5/226	NT	9.4%	intergenic (+334/‑196)	PP_2522/PP_2524	transposase/HD domain‑containing protein
	?	NC_002947	= 2871087	47 (0.830)					intergenic (+351/‑179)	PP_2522/PP_2524	transposase/HD domain‑containing protein

GTCGCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGACGGCGCCCGTGAACC  >  NC_002947/2870947‑2871233                                                                                                                                             |                                                                                                                                                   gTCGCCGTGGCGGGTCAGAACGCGTATAACAACTTGGCCGTGGCGCGGCGTGGGCTGCTATACCAGCGGGTATCCGGCGTTGACCATTTTCTGATATCTGGCACCTGCTGTCAGCACGGTGCTCTCGGCGCTATTTCACCACAGCAccac                                                                                                                                           >  1:442154/1‑148 (MQ=255)    gCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATa                                                                                                                                        >  2:209033/1‑150 (MQ=255)      cTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAgg                                                                                                                                      <  1:1100324/150‑1 (MQ=255)                cAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCAGTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACAt                                                                                                                            <  2:442154/150‑1 (MQ=255)                 aGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATg                                                                                                                           >  2:981788/1‑150 (MQ=255)                         tataCCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCa                                                                                                                   <  1:1062500/150‑1 (MQ=255)                           taCCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGt                                                                                                                 >  2:648632/1‑150 (MQ=255)                                 cgtggccgtggcGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCAATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATTTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATc                                                                                                           <  1:255167/150‑1 (MQ=255)                                     gccgtggcGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATa                                                                                                                                        <  1:893460/117‑1 (MQ=255)                                     gccgtggcGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATa                                                                                                                                        >  2:893460/1‑117 (MQ=255)                                                     ggCTGCCATACCAGCGGGTATCCGGCGCTGTCACCTTTATGATAGCGAACACGTGCGGGCAGCAAGGTGCTCAGGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGgctgc                                                                                       <  1:1600164/150‑1 (MQ=255)                                                      gCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGgctgct                                                                                      >  2:1342137/1‑150 (MQ=255)                                                        tGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTcc                                                                                    >  1:1130521/1‑150 (MQ=255)                                                          ccATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCtt                                                                                                                       >  1:189549/1‑113 (MQ=255)                                                          ccATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCtt                                                                                                                       <  2:189549/113‑1 (MQ=255)                                                           cATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGcaca                                                                                                <  1:1636874/135‑1 (MQ=255)                                                           cATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGcaca                                                                                                >  2:1636874/1‑135 (MQ=255)                                                                 aGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCa                                                                                                                                          <  2:1326715/87‑1 (MQ=255)                                                                 aGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCa                                                                                                                                          >  1:1326715/1‑87 (MQ=255)                                                                 aGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGa                                                                                                                               >  2:61083/1‑98 (MQ=255)                                                                 aGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGa                                                                                                                               <  1:61083/98‑1 (MQ=255)                                                                     ggTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTa                                                                       <  1:105833/150‑1 (MQ=255)                                                                        aTCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAg                                                                    <  1:981788/150‑1 (MQ=255)                                                                          ccGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGc                                                                  <  1:1342137/150‑1 (MQ=255)                                                                           cGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCg                                                                 >  2:196440/1‑150 (MQ=255)                                                                            ggCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACAGAAGGCGGGTGCTGCCAGTGCTGTACAGGCGt                                                                >  1:520673/1‑150 (MQ=255)                                                                                   tCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCACCGGCCAGCGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAAcc                                                         <  2:1290913/150‑1 (MQ=255)                                                                                       ttttCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACa                                                     <  1:648632/150‑1 (MQ=255)                                                                                       ttttCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACa                                                     >  1:1046036/1‑150 (MQ=255)                                                                                         ttCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATg                                                   <  2:354821/150‑1 (MQ=255)                                                                                            tGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAg                                                >  2:1204322/1‑150 (MQ=255)                                                                                            tGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAg                                                <  1:1525015/150‑1 (MQ=255)                                                                                            tGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAg                                                >  2:1525015/1‑150 (MQ=255)                                                                                               tatCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGct                                             >  1:321197/1‑150 (MQ=255)                                                                                                 tctcGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTc                                                                                     <  1:1511432/108‑1 (MQ=255)                                                                                                 tctcGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTc                                                                                     >  2:1511432/1‑108 (MQ=255)                                                                                                 tctcGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGctct                                           <  1:209033/150‑1 (MQ=255)                                                                                                   tcGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTg                                                                                                                      >  1:1062622/1‑73 (MQ=255)                                                                                                   tcGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTg                                                                                                                      <  2:1062622/73‑1 (MQ=255)                                                                                                        ccTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACt                                    >  1:805924/1‑150 (MQ=255)                                                                                                             tgTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAg                                                >  2:153342/1‑133 (MQ=255)                                                                                                             tgTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAg                                                <  1:153342/133‑1 (MQ=255)                                                                                                              gTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGctctc                                          >  2:216568/1‑138 (MQ=255)                                                                                                              gTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGctctc                                          <  1:216568/138‑1 (MQ=255)                                                                                                                   cAAGGTGCTGTCGGTGATGTCTCACCCcagcaccttgctgacagcaggtgcgagatatcagaaaatggacaacgccggatacccgc                                                                                         >  2:955426‑M2/1‑27 (MQ=255)                                                                                                                   cAAGGTGCTGTCGGTGATGTCTCACCCcagcaccttgctgacagcaggtgcgagatatcagaaaatggacaacgccggatacccgc                                                                                         <  1:955426‑M2/86‑60 (MQ=255)                                                                                                                       gTGCTGTCGGTGATGTCTCACCCcagcaccttgctgacagcaggtgcgagatatcagaaaatggacaacgccggatacccgctggtatggcagcccacgcagcgccacggccacgttggtatacgcgttctgacccgccaaggcgacgcc                     <  2:874780‑M2/150‑128 (MQ=255)                                                                                                                          cTGTCGGTGATGTCTCACCCcagcaccttgctgacagcaggtgcgagatatcagaaaatggacaacgccggatacccgctgg                                                                                      >  2:1054372‑M2/1‑20 (MQ=255)                                                                                                                          cTGTCGGTGATGTCTCACCCcagcaccttgctgacagcaggtgcgagatatcagaaaatggacaacgccggatacccgctgg                                                                                      <  1:1054372‑M2/82‑63 (MQ=255)                                                                                                                           tGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTTTACAGGCGTTGAAACCGACATGCAGGTTCTCTGTACTTGCCCAGGCAGTGTCCGGa                 <  2:597090/150‑1 (MQ=255)                                                                                                                               ggTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGACGgc             <  1:196440/150‑1 (MQ=255)                                                                                                                                gTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGACGgcg            >  2:573286/1‑150 (MQ=255)                                                                                                                                     gTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGGCGGCGCCCGt       <  2:1046036/150‑1 (MQ=255)                                                                                                                                     gTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGACGGCGCCCGt       >  1:946278/1‑150 (MQ=255)                                                                                                                                       ctcACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTGCGGACGGCGCCCGTGa     >  2:559731/1‑150 (MQ=255)                                                                                                                                        tcACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATcc                                                                                                          >  2:1482714/1‑48 (MQ=255)                                                                                                                                        tcACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATcc                                                                                                          <  1:1482714/48‑1 (MQ=255)                                                                                                                                        tcACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGACGGCGCCCGTGaa    <  1:1204322/150‑1 (MQ=255)                                                                                                                                          aCCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGACGGCGCCCGTGAAcc  >  2:1543839/1‑150 (MQ=255)                                                                                                                                             |                                                                                                                                                   GTCGCCTTGGCGGGTCAGAACGCGTATACCAACGTGGCCGTGGCGCTGCGTGGGCTGCCATACCAGCGGGTATCCGGCGTTGTCCATTTTCTGATATCTCGCACCTGCTGTCAGCAAGGTGCTGTCGGTGATGTCTCACCCCAGCACCCCATAGGCTGAAGACATGCCTTGGCAGTAACATCCCCATCGCACACAAGGCTGCTCCTGCCAGTGCTGTACAGGCGTTGAAACCGACATGCAGGCTCTCTGTACTTGCCCAGGCAGTGTCCGGACGGCGCCCGTGAACC  >  NC_002947/2870947‑2871233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.