New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3559258	42 (0.700)	4 (0.070)	4/222	NT	8.4%	coding (885/942 nt)	PP_3143	LysR family transcriptional regulator
	?	NC_002947	= 3559277	48 (0.870)					coding (866/942 nt)	PP_3143	LysR family transcriptional regulator

TGGCTGGACTTCGTGATCCTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3559104‑3559258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagccagGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAGGCATTAAGCGTG  <  NC_002947/3559277‑3559130                                                                                                                                                                                                                                                                                                                 TGGCTGGACTTCGTGATCCTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCA                                                                                                                                                           <  2:815008/150‑1   GCTGGACTTCGTGATCCTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGC                                                                                                                                                         <  1:1589015/150‑1    CTGGACTTCGTGATCCTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCC                                                                                                                                                        >  1:1132642/1‑150     TGGACTTCGTGATCCTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCA                                                                                                                                                           >  1:1270465/1‑146     TGGACTTCGTGATCCTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCA                                                                                                                                                           <  2:1270465/146‑1                                                                           CTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGGTGCGCGGGCGGTGCATGACTGGCTGG                                                                                                                           <  1:344392/108‑1                                                                           CTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGGTGCGCGGGCGGTGCATGACTGGCGGG                                                                                                                           >  2:344392/1‑108                                                                            TGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGGTGCGCGGGCGGTGCATGACTGGCTG                                                                                                                            <  1:212347/106‑1                                                                            TGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGGTGCGCGGGCGGTGCATGACTGGCTG                                                                                                                            >  2:212347/1‑106                                                                                                                                                   ACCAGCCAGGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAG              <  1:1533969/145‑1                                                                                                                                                   ACCAGCCAGGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAG              >  2:1533969/1‑145                                                                                                                                                     CAGCCAGGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAGGCATTAA       >  1:629437/1‑150                                                                                                                                                       GCCAGGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAGGCATTAAGC     >  1:1181093/1‑150                                                                                                                                                       GCCAGGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAGGCATTAAGC     <  2:1181093/150‑1                                                                                                                                                        CCAGGTGAGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAGGCATTAAGCG    >  1:1526838/1‑150                                                                                                                                                          AGGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAGGCATTAAGCGTG  >  2:583777/1‑150                                                                                                                                                                                                                                                                                                                 TGGCTGGACTTCGTGATCCTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3559104‑3559258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagccagGTGCGCGGGCGGTGCATGACTGGCTGGTGGAAGAAGCGCGGGGGTTCAGGGTGTTGCATCCGTTGAACAAGGAATAACCAGCTGGGCGCGCTTGAAGCAGGAGCGCTTCGCTCAATAAGCCTGCTTACCGGTGAAGGCATTAAGCGTG  <  NC_002947/3559277‑3559130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.