New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3559258	42 (0.700)	4 (0.070)	4/222	NT	8.4%	coding (885/942 nt)	PP_3143	LysR family transcriptional regulator
	?	NC_002947	= 3559277	48 (0.870)					coding (866/942 nt)	PP_3143	LysR family transcriptional regulator

CACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCGCCACGCCGATACCG  >  NC_002947/3559130‑3559420                                                                                                                                                    |                                                                                                                                                cACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACct                                                                                                                                               >  2:583777‑M2/1‑148 (MQ=255)   cGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCTCACctgg                                                                                                                                             >  1:1526838‑M2/1‑146 (MQ=255)    gCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggc                                                                                                                                            >  1:1181093‑M2/1‑145 (MQ=255)    gCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggc                                                                                                                                            <  2:1181093‑M2/150‑6 (MQ=255)      ttAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggctg                                                                                                                                          >  1:629437‑M2/1‑143 (MQ=255)             cTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggctggt                                                                                                                                        >  2:1533969‑M2/1‑136 (MQ=255)             cTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggctggt                                                                                                                                        <  1:1533969‑M2/145‑10 (MQ=255)                 aCCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAgccgc                                                                                                                               <  2:1445557/150‑1 (MQ=255)                     gTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACACTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAgccgc                                                                                                                               <  2:193913/146‑1 (MQ=255)                     gTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACACTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAgccgc                                                                                                                               >  1:193913/1‑146 (MQ=255)                        aGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCgg                                                                                                                        <  2:974624/150‑1 (MQ=255)                             gCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAAt                                                                                                                   >  1:40155/1‑150 (MQ=255)                               ttATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCTGCCAGTCATGCACCGCCCGCGCACCTAGCGTGTTCAAGCCGCCTGGCGGGTAATGc                                                                                                                 <  1:298709/150‑1 (MQ=255)                                             gcTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCtt                                                                                                   <  1:1051239/150‑1 (MQ=255)                                               tCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTtgt                                                                                                 <  1:1181267/150‑1 (MQ=255)                                                  tGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGt                                                                                              <  2:163661/150‑1 (MQ=255)                                                     ttCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACTTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTgg                                                                                           >  1:679643/1‑150 (MQ=255)                                                     ttCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTgg                                                                                           <  1:483235/150‑1 (MQ=255)                                                           cgcgcCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCg                                                                                     <  2:137960/150‑1 (MQ=255)                                                                  aGCTGGTTAATACTTGTTCAACGGATGCATCACCCTGCACCCCCGCGCAGCTGCCACCAGCCAGTCAGGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACAcc                                                                              >  2:16802/1‑150 (MQ=255)                                                                           ttCCTTGTTCAACGGATGCAACACCCTGATCCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTGCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCAc                                                                     <  1:719495/150‑1 (MQ=255)                                                                                  ttCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGt                                                              >  1:153653/1‑150 (MQ=255)                                                                                     aaCGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGcc                                                           >  2:1525580/1‑150 (MQ=255)                                                                                      aCGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCGCCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGccc                                                          >  1:28267/1‑150 (MQ=255)                                                                                      aCGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTAccc                                                          >  1:612752/1‑150 (MQ=255)                                                                                       cGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                                          >  1:630650/1‑133 (MQ=255)                                                                                       cGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                                          <  2:630650/133‑1 (MQ=255)                                                                                         gATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCa                                                                      <  1:60087/135‑1 (MQ=255)                                                                                         gATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCa                                                                      >  2:60087/1‑135 (MQ=255)                                                                                              aaCACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                                          >  1:1259849/1‑126 (MQ=255)                                                                                              aaCACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                                          <  2:1259849/126‑1 (MQ=255)                                                                                               acacCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCa                                                 >  2:852246/1‑150 (MQ=255)                                                                                                  cccTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGcacca                                                                                                             >  1:1424852/1‑87 (MQ=255)                                                                                                  cccTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGcacca                                                                                                             <  2:1424852/87‑1 (MQ=255)                                                                                                    cTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCGAACGGCACGATCAGTACCCCGCGTTCCAGTtca                                            >  1:739365/1‑150 (MQ=255)                                                                                                         cccccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTCCACCAAACGTCACGATCAGTGCCCCGCGTTCCAGTTCATCAtt                                       <  2:679643/150‑1 (MQ=255)                                                                                                         cccccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCAtt                                       <  2:788319/150‑1 (MQ=255)                                                                                                         cccccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGNACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCAtt                                       <  1:1507430/150‑1 (MQ=255)                                                                                                           cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGt                                                                                   >  2:1386758/1‑104 (MQ=255)                                                                                                           cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGt                                                                                   <  1:1386758/104‑1 (MQ=255)                                                                                                           cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                                     <  1:844505/150‑1 (MQ=255)                                                                                                           cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                                     <  1:1067306/150‑1 (MQ=255)                                                                                                           cccGCGCTTCTCCCCCCCGCCCGTCCTGCGCCGGCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAACCGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                                     <  2:739365/150‑1 (MQ=255)                                                                                                            ccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTacac                                                                               <  2:871901/107‑1 (MQ=255)                                                                                                            ccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTacac                                                                               >  1:871901/1‑107 (MQ=255)                                                                                                                   tcttcCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTg                             >  1:171587/1‑150 (MQ=255)                                                                                                                         accaGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                                     <  1:339068/136‑1 (MQ=255)                                                                                                                         accaGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                                     >  2:339068/1‑136 (MQ=255)                                                                                                                          cccgccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcag                                                                >  2:344392‑M2/1‑27 (MQ=255)                                                                                                                          ccagccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcag                                                                <  1:344392‑M2/108‑82 (MQ=255)                                                                                                                           cagccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagca                                                                 <  1:212347‑M2/106‑81 (MQ=255)                                                                                                                           cagccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagca                                                                 >  2:212347‑M2/1‑26 (MQ=255)                                                                                                                               cagTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATc                 <  1:177334/150‑1 (MQ=255)                                                                                                                               cagTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATc                 <  1:852246/150‑1 (MQ=255)                                                                                                                                agTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTg                                                             <  2:1529731/105‑1 (MQ=255)                                                                                                                                agTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTg                                                             >  1:1529731/1‑105 (MQ=255)                                                                                                                                agTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCg                >  2:1122811/1‑150 (MQ=255)                                                                                                                                         ccgcccgcGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCGCCACGCCGa       <  2:1132642/150‑1 (MQ=255)                                                                                                                                              cgcgCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCGCCACGCCGATACCg  <  2:28267/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                CACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCGCCACGCCGATACCG  >  NC_002947/3559130‑3559420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.