New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3559258	42 (0.700)	4 (0.070)	4/222	NT	8.4%	coding (885/942 nt)	PP_3143	LysR family transcriptional regulator
	?	NC_002947	= 3559277	48 (0.870)					coding (866/942 nt)	PP_3143	LysR family transcriptional regulator

CTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCG  >  NC_002947/3559122‑3559406                                                                                                                                         |                                                                                                                                                     cTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCAccgccc                                                                                                                                         >  1:163661/1‑150 (MQ=255)         cACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACct                                                                                                                                 >  2:583777‑M2/1‑148 (MQ=255)           cGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCTCACctgg                                                                                                                               >  1:1526838‑M2/1‑146 (MQ=255)            gCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggc                                                                                                                              >  1:1181093‑M2/1‑145 (MQ=255)            gCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggc                                                                                                                              <  2:1181093‑M2/150‑6 (MQ=255)              ttAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggctg                                                                                                                            >  1:629437‑M2/1‑143 (MQ=255)                     cTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggctggt                                                                                                                          <  1:1533969‑M2/145‑10 (MQ=255)                     cTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACctggctggt                                                                                                                          >  2:1533969‑M2/1‑136 (MQ=255)                         aCCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAgccgc                                                                                                                 <  2:1445557/150‑1 (MQ=255)                             gTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACACTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAgccgc                                                                                                                 >  1:193913/1‑146 (MQ=255)                             gTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACACTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAgccgc                                                                                                                 <  2:193913/146‑1 (MQ=255)                                aGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCgg                                                                                                          <  2:974624/150‑1 (MQ=255)                                     gCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAAt                                                                                                     >  1:40155/1‑150 (MQ=255)                                       ttATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCTGCCAGTCATGCACCGCCCGCGCACCTAGCGTGTTCAAGCCGCCTGGCGGGTAATGc                                                                                                   <  1:298709/150‑1 (MQ=255)                                                     gcTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCtt                                                                                     <  1:1051239/150‑1 (MQ=255)                                                       tCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTtgt                                                                                   <  1:1181267/150‑1 (MQ=255)                                                         cTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGgtgcgcgggcggtgcatgactggctgg                                                                                                                           <  1:344392‑M1/108‑28 (MQ=255)                                                         cTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGgtgcgcgggcggtgcatgactggcggg                                                                                                                           >  2:344392‑M1/1‑81 (MQ=255)                                                          tGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGgtgcgcgggcggtgcatgactggctg                                                                                                                            >  2:212347‑M1/1‑80 (MQ=255)                                                          tGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGgtgcgcgggcggtgcatgactggctg                                                                                                                            <  1:212347‑M1/106‑27 (MQ=255)                                                          tGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGt                                                                                <  2:163661/150‑1 (MQ=255)                                                             ttCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACTTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTgg                                                                             >  1:679643/1‑150 (MQ=255)                                                             ttCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTgg                                                                             <  1:483235/150‑1 (MQ=255)                                                                   cgcgcCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCg                                                                       <  2:137960/150‑1 (MQ=255)                                                                          aGCTGGTTAATACTTGTTCAACGGATGCATCACCCTGCACCCCCGCGCAGCTGCCACCAGCCAGTCAGGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACAcc                                                                >  2:16802/1‑150 (MQ=255)                                                                                   ttCCTTGTTCAACGGATGCAACACCCTGATCCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTGCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCAc                                                       <  1:719495/150‑1 (MQ=255)                                                                                          ttCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGt                                                >  1:153653/1‑150 (MQ=255)                                                                                             aaCGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGcc                                             >  2:1525580/1‑150 (MQ=255)                                                                                              aCGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCGCCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGccc                                            >  1:28267/1‑150 (MQ=255)                                                                                              aCGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTAccc                                            >  1:612752/1‑150 (MQ=255)                                                                                               cGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                            >  1:630650/1‑133 (MQ=255)                                                                                               cGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                            <  2:630650/133‑1 (MQ=255)                                                                                                 gATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCa                                                        <  1:60087/135‑1 (MQ=255)                                                                                                 gATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCa                                                        >  2:60087/1‑135 (MQ=255)                                                                                                      aaCACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                            <  2:1259849/126‑1 (MQ=255)                                                                                                      aaCACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAAc                                                            >  1:1259849/1‑126 (MQ=255)                                                                                                       acacCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCa                                   >  2:852246/1‑150 (MQ=255)                                                                                                          cccTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGcacca                                                                                               >  1:1424852/1‑87 (MQ=255)                                                                                                          cccTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGcacca                                                                                               <  2:1424852/87‑1 (MQ=255)                                                                                                            cTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCGAACGGCACGATCAGTACCCCGCGTTCCAGTtca                              >  1:739365/1‑150 (MQ=255)                                                                                                                 cccccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTCCACCAAACGTCACGATCAGTGCCCCGCGTTCCAGTTCATCAtt                         <  2:679643/150‑1 (MQ=255)                                                                                                                 cccccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCAtt                         <  2:788319/150‑1 (MQ=255)                                                                                                                 cccccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGNACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCAtt                         <  1:1507430/150‑1 (MQ=255)                                                                                                                   cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGt                                                                     <  1:1386758/104‑1 (MQ=255)                                                                                                                   cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGt                                                                     >  2:1386758/1‑104 (MQ=255)                                                                                                                   cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                       <  1:1067306/150‑1 (MQ=255)                                                                                                                   cccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                       <  1:844505/150‑1 (MQ=255)                                                                                                                   cccGCGCTTCTCCCCCCCGCCCGTCCTGCGCCGGCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAACCGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                       <  2:739365/150‑1 (MQ=255)                                                                                                                    ccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTacac                                                                 <  2:871901/107‑1 (MQ=255)                                                                                                                    ccGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTacac                                                                 >  1:871901/1‑107 (MQ=255)                                                                                                                           tcttcCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTg               >  1:171587/1‑150 (MQ=255)                                                                                                                                 accaGCCAGgtgcgcgggcggtgcatgactggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcaggagcgcttcgctcaataagcctgcttaccggtgaag              <  1:1533969‑M1/145‑137 (MQ=255)                                                                                                                                 accaGCCAGgtgcgcgggcggtgcatgactggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcaggagcgcttcgctcaataagcctgcttaccggtgaag              >  2:1533969‑M1/1‑9 (MQ=255)                                                                                                                                 accaGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                       <  1:339068/136‑1 (MQ=255)                                                                                                                                 accaGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGa                       >  2:339068/1‑136 (MQ=255)                                                                                                                                  cccgccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcag                                                  >  2:344392‑M2/1‑27 (MQ=255)                                                                                                                                  ccagccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcag                                                  <  1:344392‑M2/108‑82 (MQ=255)                                                                                                                                   cagccaggtgcgcgggcggtgcatgactggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcaggagcgcttcgctcaataagcctgcttaccggtgaaggcattaa       >  1:629437‑M1/1‑7 (MQ=255)                                                                                                                                   cagccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagca                                                   >  2:212347‑M2/1‑26 (MQ=255)                                                                                                                                   cagccagTCATGCACCGCCCGCGCACctggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagca                                                   <  1:212347‑M2/106‑81 (MQ=255)                                                                                                                                     gccaggtgcgcgggcggtgcatgactggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcaggagcgcttcgctcaataagcctgcttaccggtgaaggcattaagc     >  1:1181093‑M1/1‑5 (MQ=255)                                                                                                                                     gccaggtgcgcgggcggtgcatgactggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcaggagcgcttcgctcaataagcctgcttaccggtgaaggcattaagc     <  2:1181093‑M1/150‑146 (MQ=255)                                                                                                                                      ccaggtgagcgggcggtgcatgactggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcaggagcgcttcgctcaataagcctgcttaccggtgaaggcattaagcg    >  1:1526838‑M1/1‑4 (MQ=255)                                                                                                                                       cagTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATc   <  1:852246/150‑1 (MQ=255)                                                                                                                                       cagTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATc   <  1:177334/150‑1 (MQ=255)                                                                                                                                        aggtgcgcgggcggtgcatgactggctggtggaagaagcgcgggggttcagggtgttgcatccgttgaacaaggaataaccagctgggcgcgcttgaagcaggagcgcttcgctcaataagcctgcttaccggtgaaggcattaagcgtg  >  2:583777‑M1/1‑2 (MQ=255)                                                                                                                                        agTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTg                                               >  1:1529731/1‑105 (MQ=255)                                                                                                                                        agTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTg                                               <  2:1529731/105‑1 (MQ=255)                                                                                                                                        agTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCg  >  2:1122811/1‑150 (MQ=255)                                                                                                                                         |                                                                                                                                                     CTGGTGCGCACGCTTAATGCCTTCACCGGTAAGCAGGCTTATTGAGCGAAGCGCTCCTGCTTCAAGCGCGCCCAGCTGGTTATTCCTTGTTCAACGGATGCAACACCCTGAACCCCCGCGCTTCTTCCACCAGCCAGTCATGCACCGCCCGCGCACCTGGCTGGTTCAAGCCGCCTGGCGGGTAATGCACCACATAACGCTTGTGGTTGGCGATCGGTACACCAAACGGCACGATCAGTGCCCCGCGTTCCAGTTCATCATTGAGCAGCGTGCGGCGGGCAATCG  >  NC_002947/3559122‑3559406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.