New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3696196	52 (0.870)	3 (0.050)	3/232	NT	5.3%	coding (15/2502 nt)	ligD	DNA ligase D
	?	NC_002947	= 3696222	56 (0.970)					intergenic (‑12/‑179)	ligD/PP_3261	DNA ligase D/hypothetical protein

CCATCGAGCTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3696047‑3696196 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAATACGCGCGCAAGCGCGACTTCAACGCCACACCCGAGCCCAGCGGCAAACGCAAACGTGGCAAACGGGCCCATGCGCTGCAGTTCTGCATCCAGAAACACGACGCCAGTCATTTGCA  <  NC_002947/3696222‑3696074                                                                                                                                                                                                                                                                                                             CCATCGAGCTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGC                                                                                                                                                       <  2:1041234/150‑1               GCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGC                                                                                                                                                       >  2:254774/1‑136               GCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTGTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGC                                                                                                                                                       <  1:254774/136‑1                                        GCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGACCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGCCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAATACGCG                                                                                                                <  1:14362/150‑1                                                        TGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGCCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAAT                                                                                                                     >  1:662143/1‑129                                                        TGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGCCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAAT                                                                                                                     <  2:662143/129‑1                                                                                                                                                   CTGCCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAATACGCGCGCAAGCGCGACTTCAACGCCACACCCGAGCCCAGCGGCAAACGCAAACGTGGCAAACGGGCCCATGCGCTGCAGTTCTGCATCCAGAAACACGACGCCAGTCATTT     >  2:1428099/1‑150                                                                                                                                                    TGCCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAATACGCGCGCAAGCGCGACTTCAACGCCACACCCGAGCCCAGCGGCAAA                                                                      >  1:299109/1‑84                                                                                                                                                    TGCCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAATACGCGCGCAAGCGCGACTTCAACGCCACACCCGAGCCCAGCGGCAAA                                                                      <  2:299109/84‑1                                                                                                                                                      CCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAATACGCGCGCAAGCGCGACTTCAACGCCACACCCGAGCCCAGCGGCAAACGCAAACGTGGCAAACGGGCCCATGCGCTGCAGTTCTGCATCCAGAAACACGACGCCAGTCATTTGCA  <  1:636186/150‑1                                                                                                                                                                                                                                                                                                             CCATCGAGCTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3696047‑3696196 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcCCGGAGCCCGCCATGGCCAAGCCCCTGCAGGAATACGCGCGCAAGCGCGACTTCAACGCCACACCCGAGCCCAGCGGCAAACGCAAACGTGGCAAACGGGCCCATGCGCTGCAGTTCTGCATCCAGAAACACGACGCCAGTCATTTGCA  <  NC_002947/3696222‑3696074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.