New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3696196	52 (0.870)	3 (0.050)	3/232	NT	5.3%	coding (15/2502 nt)	ligD	DNA ligase D
	?	NC_002947	= 3696222	56 (0.970)					intergenic (‑12/‑179)	ligD/PP_3261	DNA ligase D/hypothetical protein

CCATCGAGCTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGAACGCACATGACCCG  >  NC_002947/3696047‑3696345                                                                                                                                                       |                                                                                                                                                      ccATCGAGCTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑C                                                                                                                                                       <  2:1041234‑M1/150‑1 (MQ=255)      gAGCTCCAGGCGGAAGTCGTAGTGGAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAgggg                                                                                                                                                  <  2:297353/150‑1 (MQ=255)      gAGCTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAgggg                                                                                                                                                  <  1:781958/150‑1 (MQ=255)         cTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCtt                                                                                                                                               <  2:448167/150‑1 (MQ=255)           ccAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTgg                                                                                                                                             <  2:1135789/150‑1 (MQ=255)            cAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGc                                                                                                                                            >  2:769346/1‑150 (MQ=255)               gCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑C                                                                                                                                                       >  2:254774‑M1/1‑136 (MQ=255)               gCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTGTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑C                                                                                                                                                       <  1:254774‑M1/136‑1 (MQ=255)                 ggAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGAGTGGCATTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATgg                                                                                                                                       >  2:58809/1‑150 (MQ=255)                            tGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGg                                                                                                                            <  1:636186‑M2/150‑2 (MQ=255)                               aaaTGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGgcag                                                                                                                         >  2:1428099‑M2/1‑146 (MQ=255)                                     cTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAg                                                                                                                   <  2:636186/150‑1 (MQ=255)                                      gggCGTCGTGTTTCTTGATGCAGAACTGCCGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAgg                                                                                                                  <  2:617118/149‑1 (MQ=255)                                       ggCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGt                                                                                                                 <  1:381640/150‑1 (MQ=255)                                        gCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGACCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑Cccggagcccgccatggccaagcccctgcaggaatacgcg                                                                                                                <  1:14362‑M1/150‑40 (MQ=255)                                          gtcgtGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGtctc                                                                                                              >  2:1123746/1‑150 (MQ=255)                                           tcgtGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGa                                                                                                                        <  2:1130063/139‑1 (MQ=255)                                           tcgtGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGa                                                                                                                        >  1:1130063/1‑139 (MQ=255)                                            cgtGTTTCTGGATGCAGAACTTCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTa                                                                                                            <  1:83516/150‑1 (MQ=255)                                             gtgtTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTaa                                                                                                           >  2:1132675/1‑150 (MQ=255)                                                tttCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTctct                                                                                                             <  2:1035661/145‑1 (MQ=255)                                                tttCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTctct                                                                                                             >  1:1035661/1‑145 (MQ=255)                                                  tCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAgg                                                                                                                                                    <  1:745895/104‑1 (MQ=255)                                                  tCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAgg                                                                                                                                                    >  2:745895/1‑104 (MQ=255)                                                    tGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGa                                                                                                    <  2:748361/150‑1 (MQ=255)                                                        tGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑Cccggagcccgccatggccaagcccctgcaggaat                                                                                                                     <  2:662143‑M1/129‑35 (MQ=255)                                                        tGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑Cccggagcccgccatggccaagcccctgcaggaat                                                                                                                     >  1:662143‑M1/1‑95 (MQ=255)                                                           aGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATgg                                                                                                                                       >  2:1298617/1‑108 (MQ=255)                                                           aGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATgg                                                                                                                                       <  1:1298617/108‑1 (MQ=255)                                                           aGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGc                                                                                                                                      >  2:893886/1‑109 (MQ=255)                                                           aGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGc                                                                                                                                      <  1:893886/109‑1 (MQ=255)                                                           aGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCgccg                                                                                             <  1:299917/150‑1 (MQ=255)                                                                        aTGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAg                                                                                >  2:216473/1‑150 (MQ=255)                                                                         tGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATTAAGGTTTCTAAGGTGGGAGGCGCCGGCCGAGGCTGTAGt                                                                               <  2:62284/150‑1 (MQ=255)                                                                            gCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCa                                                                            >  1:602495/1‑150 (MQ=255)                                                                               cGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCaaaa                                                                         <  1:216473/150‑1 (MQ=255)                                                                                 tttGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCaaaaaa                                                                       <  1:1132675/150‑1 (MQ=255)                                                                                      cACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCaaaa                                                                         <  2:1559149/143‑1 (MQ=255)                                                                                      cACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCaaaa                                                                         >  1:1559149/1‑143 (MQ=255)                                                                                       aCGTTTGCGTTTGGCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCG‑CTGACTGTCAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGa                                                                 <  1:838068/150‑1 (MQ=255)                                                                                       aCGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATgg                                                                                                                                       >  1:394812/1‑80 (MQ=255)                                                                                       aCGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATgg                                                                                                                                       <  2:394812/80‑1 (MQ=255)                                                                                        cgtttgcgtttgCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGTAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGaa                                                                >  1:751744/1‑150 (MQ=255)                                                                                         gtttgcgtttgcCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGa                                                                 <  2:1238257/148‑1 (MQ=255)                                                                                         gtttgcgtttgcCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGa                                                                 >  1:1238257/1‑148 (MQ=255)                                                                                            tgcgtttgcCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCtt                                                            <  1:769346/150‑1 (MQ=255)                                                                                                tttgcCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGgca                                                                                                                          >  1:299109‑M2/1‑81 (MQ=255)                                                                                                tttgcCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGgca                                                                                                                          <  2:299109‑M2/84‑4 (MQ=255)                                                                                                     cGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCt                                                   <  1:1134836/150‑1 (MQ=255)                                                                                                        tGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAgggg                                                                                                                                                  <  1:159142/52‑1 (MQ=255)                                                                                                        tGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAgggg                                                                                                                                                  >  2:159142/1‑52 (MQ=255)                                                                                                             tCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCg                                               >  1:230850/1‑146 (MQ=255)                                                                                                             tCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCg                                               <  2:230850/146‑1 (MQ=255)                                                                                                                 gtgtGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTg                                                  <  2:1333257/139‑1 (MQ=255)                                                                                                                 gtgtGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑AAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTg                                                  >  1:1333257/1‑139 (MQ=255)                                                                                                                   gtgGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGt                                                                                                                 <  1:561891/74‑1 (MQ=255)                                                                                                                   gtgGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGt                                                                                                                 >  2:561891/1‑74 (MQ=255)                                                                                                                        gTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCgg                                                                                   >  2:1612900/1‑99 (MQ=255)                                                                                                                        gTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCgg                                                                                   <  1:1612900/99‑1 (MQ=255)                                                                                                                              gTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCAc                          <  1:1123746/150‑1 (MQ=255)                                                                                                                                 gcgcTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGaa                               >  1:1111175/1‑142 (MQ=255)                                                                                                                                 gcgcTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGaa                               <  2:1111175/142‑1 (MQ=255)                                                                                                                                 gcgcTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTg                       >  1:1244040/1‑150 (MQ=255)                                                                                                                                     ttGCGCGCGTATTCCTG‑CAGGGGCTTGNCCATGGCGGGCTNCGGGCANATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATgg                   >  1:992274/1‑150 (MQ=255)                                                                                                                                         gcgcgTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGaa               >  1:594893/1‑150 (MQ=255)                                                                                                                                          cgcgTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagcccagcggcaaacgcaaacgtggcaaacggtcccatgcgctgcagttctgcatccagaaacacgacgc              <  1:14362‑M2/150‑112 (MQ=255)                                                                                                                                           gcgTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGAACg             >  2:299291/1‑150 (MQ=255)                                                                                                                                           gcgTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGAACg             >  2:658719/1‑150 (MQ=255)                                                                                                                                               aTTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagcccagcggcaaacgcaaacgtggcaaacgggcccatgcgctgcagttctgca                              >  1:662143‑M2/1‑34 (MQ=255)                                                                                                                                               aTTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagcccagcggcaaacgcaaacgtggcaaacgggcccatgcgctgcagttctgca                              <  2:662143‑M2/129‑96 (MQ=255)                                                                                                                                                ttCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGAACGCACAt        <  2:1244040/150‑1 (MQ=255)                                                                                                                                                   cTG‑Cccggagcccgccatggccaagcccctgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagcccagcggcaaacgcaaacgtggcaaacgggcccatgcgctgcagttctgcatccagaaacacgacgccagtcattt     >  2:1428099‑M1/1‑4 (MQ=255)                                                                                                                                                   cTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCaa                                                                           >  2:1395468/1‑80 (MQ=255)                                                                                                                                                   cTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCaa                                                                           <  1:1395468/80‑1 (MQ=255)                                                                                                                                                    tG‑Cccggagcccgccatggccaagcccctgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagcccagcggcaaa                                                                      <  2:299109‑M1/84‑82 (MQ=255)                                                                                                                                                    tG‑Cccggagcccgccatggccaagcccctgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagcccagcggcaaa                                                                      >  1:299109‑M1/1‑3 (MQ=255)                                                                                                                                                    tG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGAACGCACATgacc    <  1:299291/150‑1 (MQ=255)                                                                                                                                                    tG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGAACGCACATgacc    <  2:751744/150‑1 (MQ=255)                                                                                                                                                       cccggagcccgccatggccaagcccctgcaggaatacgcgcgcaagcgcgacttcaacgccacacccgagcccagcggcaaacgcaaacgtggcaaacgggcccatgcgctgcagttctgcatccagaaacacgacgccagtcatttgca  <  1:636186‑M1/150‑150 (MQ=255)                                                                                                                                                       |                                                                                                                                                      CCATCGAGCTCCAGGCGGAAGTCGTAGTGCAAATGACTGGCGTCGTGTTTCTGGATGCAGAACTGCAGCGCATGGGCCCGTTTGCCACGTTTGCGTTTGCCGCTGGGCTCGGGTGTGGCGTTGAAGTCGCGCTTGCGCGCGTATTCCTG‑CAGGGGCTTGGCCATGGCGGGCTCCGGGCAGATCAAGGTCTCTAAGGTGGGAGGCGCCGGCCGAGGCGGTAGTTCAAAAAACTCTGAATCTTCCGTGAGCTGGCGTAGTCGACCGAATGAAGCCACCTGATGGAGAACGCACATGACCCG  >  NC_002947/3696047‑3696345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.