New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4047836	77 (1.290)	8 (0.140)	8/224	NT	9.9%	coding (343/2418 nt)	quiA	quinate dehydrogenase
	?	NC_002947	= 4047845	73 (1.310)					coding (352/2418 nt)	quiA	quinate dehydrogenase

AGAAGGCGGGCGCCTGGCTGTATGCCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTGATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4047681‑4047836 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgcCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCATGCCGATTGCGCCGAACATGAACAGGCGCGAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATGGCAGTACCGACCAGGAACACGGCATACAGC  <  NC_002947/4047845‑4047697                                                                                                                                                                                                                                                                                                                   AGAAGGCGGGCGCCTGGCTGTATGCCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTGATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGC                                                                                                                                                             >  1:62754/1‑150   AAGGCGGGCGCCTGGCTGTATGCCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTGATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTG                                                                                                                                                           <  1:604708/150‑1      GCGGGCGCCTGGCTGTATGCCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTAATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCG                                                                                                                                                        <  2:135461/150‑1       CGGGCGCCTGGCTGTATGCCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTGATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGC                                                                                                                                                       <  2:479984/150‑1                         CCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTGATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGCCGTTGGCACGCGCCAGCA                                                                                                                                     >  2:69953/1‑150                         CCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTGATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGCCGTTGGCACGCGCCAGCA                                                                                                                                     <  1:69953/150‑1                                                            ATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTG                                                                                                                                                           >  2:953135/1‑93                                                            ATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTG                                                                                                                                                           <  1:953135/93‑1                                                                                 TGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGCCGTTGGCACGCGCCAGCAGCGGGT                                                                                                                               <  1:884317/100‑1                                                                                 TGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGCCGTTGGCACGCGCCAGCAGCGGGT                                                                                                                               >  2:884317/1‑100                                                                                      GCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCCGCTGGCGCCGTTGGCACGCGCCAGCAGCG                                                                                                                                  >  2:332672/1‑92                                                                                      GCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCCGCTGGCGCCGTTGGCACGCGCCAGCAGCG                                                                                                                                  <  1:332672/92‑1                                                                                             TCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGCCGTTGGCACGCGCCAGCAGCGGG                                                                                                                                >  1:736693/1‑87                                                                                             TCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGCCGTTGGCACGCGCCAGCAGCGGG                                                                                                                                <  2:736693/87‑1                                                                                                                                                     GCTGGCGCCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCATGCCGATTGCGCCGAACATGAACAGGCGCGAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATGGCAGTACCGACCAGGAACACGGC         >  2:1444287/1‑150                                                                                                                                                     GCTGGCGCCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCATGCCGATTGCGCCGAACATGAACAGGCGCGAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATGGCAGTACCGACCAGGAACACGGC         <  1:1014797/150‑1                                                                                                                                                       TGGCGCCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCATGCCGATTGCGCCGAACATGAACAGGCGCGAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATGGCAGTACCGACCAGGAACACGGCAT       <  1:1260551/150‑1                                                                                                                                                          CGCCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCATGCCGATTGCGCCGAACATGAACAGGCGCGAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATTGCAGTACCGACCAGGAACACGGCATACA    <  1:1563639/150‑1                                                                                                                                                           GCCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCATGCCGATTGCGCCGAACATGAACAGGCGCGAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATGGCAGTACCGACCAGGAACACGGCATACAG   >  2:1077712/1‑150                                                                                                                                                            CCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCACCCAGCTTCCGTCGTACATGAACAGGCTCTAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATGGCAGTACCGACCAGGAACACGGCATACAGC  <  2:387583/150‑1                                                                                                                                                                                                                                                                                                                   AGAAGGCGGGCGCCTGGCTGTATGCCGTGTTCCTGGTCGGTACTGCCATCTGGGCACTGATCGATGCGGGCCTGGTGTTCTGGCCGCTGTTCTCGCGCCTGTTCATGTTCGGCGCAATCGGCATGGTCGTGGCGCTGGTCTACCCGCTGCTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4047681‑4047836 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgcCGTTGGCACGCGCCAGCAGCGGGTAGACCAGCGCCACGACCATGCCGATTGCGCCGAACATGAACAGGCGCGAGAACAGCGGCCAGAACACCAGGCCCGCATCGATCAGTGCCCAGATGGCAGTACCGACCAGGAACACGGCATACAGC  <  NC_002947/4047845‑4047697

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.