| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5519871 | 89 (1.490) | 7 (0.120) | 7/228 | NT | 8.9% | intergenic (‑94/‑132) | PP_4852/PP_4853 | AraC family transcriptional regulator/DMT superfamily permease |
| ? | NC_002947 | = 5519958 | 58 (1.020) | intergenic (‑181/‑45) | PP_4852/PP_4853 | AraC family transcriptional regulator/DMT superfamily permease | |||||
GTACACCGGGGCCGGCAGTTGGGTGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5519721‑5519871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGCCTGCAAGGCAGGTCCTCGATAGGCCTGTATTATCGAGTGTCTGTCTACAAGCCTATACTTC < NC_002947/5519958‑5519811 GTACACCGGGGCCGGCAGTTGGGTGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCA < 1:999414/150‑1GTACACCGGGGCCGGCAGTTGGGTGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCCTGCA > 2:895529/1‑150 AACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGTGAACCCGCTCCT > 2:278852/1‑150 TGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGGGCAACACTCGATAATACAGGCCTATCGAGGACCTGCTTTGGAGCTTTTCGCGAGCATACCCGCTCCTACG > 1:767308/1‑150 GCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTG > 1:658178/1‑145 GCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTG < 2:658178/145‑1 GGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGATCCCGCGAA < 2:767308/150‑1 GATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAG < 1:278852/150‑1 GAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCTTTGCAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGCCT < 2:930446/150‑1 CAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGA < 1:1161729/35‑1 CAGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGA > 2:1161729/1‑35 AGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGCCTGCAAGGCAGGTCCTCGATAGGCCTGTATTATCGAGTGTCTGTCTACAAGCCTATACTTC > 1:132706/1‑150 AGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGCCTGCAAGGCAGGTCCTCGATAGGCCTGTATTATC < 1:1624864/123‑1 AGCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGCCTGCAAGGCAGGTCCTCGATAGGCCTGTATTATC > 2:1624864/1‑123 GTACACCGGGGCCGGCAGTTGGGTGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTGCAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5519721‑5519871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcagCCCTTCGCGGGTGAACCCGCTCCTACGGGGGATACACAGGCCTGGAGGCTGGCGCAGATCCTGTGGGAGCGGGGAGCCCGCGAAGGCCTGCAAGGCAGGTCCTCGATAGGCCTGTATTATCGAGTGTCTGTCTACAAGCCTATACTTC < NC_002947/5519958‑5519811 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |