New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5519871	89 (1.490)	7 (0.120)	7/228	NT	8.9%	intergenic (‑94/‑132)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	= 5519958	58 (1.020)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease

TAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTT  >  NC_002947/5519809‑5520103                                                                                                                                                      |                                                                                                                                                  tAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAggg                                                                                                                                                   <  1:1475228/150‑1 (MQ=255)   gAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGct                                                                                                                                                 >  1:132706‑M2/1‑148 (MQ=255)         taGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAag                                                                                                                                           <  2:548282/150‑1 (MQ=255)          aGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagc                                                                                                                                          >  2:436051/1‑150 (MQ=255)            gCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACGTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCTCCCGTATGAGCGGGTTCAACCGCTACTGGCTGAAAagcag                                                                                                                                        >  2:694928/1‑150 (MQ=255)                    acagacaCTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagca                                                                                                                                         <  1:222902/141‑1 (MQ=255)                    acagacaCTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagca                                                                                                                                         >  2:222902/1‑141 (MQ=255)                      agacaCTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCAt                                                                                                                                  >  1:1241302/1‑146 (MQ=255)                      agacaCTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCAt                                                                                                                                  <  2:1241302/146‑1 (MQ=255)                      agacaCTCGATAATACAGGCCTATCGAGCACCTGCCTTGCAGGCCTTNGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                                                                                                              >  1:625482/1‑150 (MQ=255)                      acccacTCGATAATACAGGCCTCTCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                                                                                                              <  1:895529/147‑1 (MQ=255)                            tCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGCCACCTGCAGGTTCCGTGGAATCACCCGATCTGCTCTGGCGTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGccccc                                                                                                                        >  1:444974/1‑150 (MQ=16)                             cGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCa                                                                                                                       <  1:643997/150‑1 (MQ=255)                              gATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCCCAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagcagc                                                                                                                                       <  1:775199/133‑1 (MQ=255)                              gATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGct                                                                                                                                                 >  2:1624864‑M2/1‑121 (MQ=255)                              gATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGct                                                                                                                                                 <  1:1624864‑M2/123‑3 (MQ=255)                              gATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagcagc                                                                                                                                       >  2:775199/1‑133 (MQ=255)                              gATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAg                                                                                                                      <  1:1503470/150‑1 (MQ=255)                                 aataCAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCa                                                                                                                                   >  2:1226800/1‑134 (MQ=255)                                 aataCAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCa                                                                                                                                   <  1:1226800/134‑1 (MQ=255)                                 aataCAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                                                                                                              >  1:435976/1‑139 (MQ=255)                                 aataCAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                                                                                                              <  2:435976/139‑1 (MQ=255)                                  ataCAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAg                                                                                                                  <  2:1599912/150‑1 (MQ=255)                                        gCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCct                                                                                                            >  2:966026/1‑150 (MQ=255)                                        gCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCGGTGTCTCCCCCGTACCAGCGGCGTCACGCGCGAAGGTCTGCCAAGCAGCCCCAGTCCAGCCCCCTGCTAGTAACct                                                                                                            >  2:84964/1‑150 (MQ=255)                                          cTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCctgc                                                                                                          >  1:1225783/1‑150 (MQ=255)                                            aTCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCctgctg                                                                                                        >  1:559674/1‑150 (MQ=255)                                            aTCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCctgctg                                                                                                        >  1:455389/1‑150 (MQ=255)                                              cGATGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCa                                                                                                      <  1:159566/150‑1 (MQ=255)                                                     cTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTa                                                                                               >  1:350845/1‑150 (MQ=255)                                                      tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGGGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGATTACCCAGCTGCATGAACTAc                                                                                              >  1:585798/1‑150 (MQ=255)                                                      tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCCGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc                                                                                              >  1:676827/1‑150 (MQ=255)                                                      tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTAcc                                                                                                              <  1:1187860/134‑1 (MQ=255)                                                      tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTAcc                                                                                                              >  2:1187860/1‑134 (MQ=255)                                                      tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc                                                                                              <  2:550408/150‑1 (MQ=255)                                                      tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc                                                                                              <  1:1229248/150‑1 (MQ=255)                                                      tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc                                                                                              <  2:1383864/150‑1 (MQ=255)                                                       gCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAcc                                                                                             >  1:876772/1‑150 (MQ=255)                                                        ccTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCt                                                                                            <  2:211295/150‑1 (MQ=255)                                                        ccTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCt                                                                                            <  1:1476797/150‑1 (MQ=255)                                                           tGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGtt                                                                                         <  1:436051/150‑1 (MQ=255)                                                              aGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGctgcaaagcaggtcctcgataggcctgtattatcgagtgtctgtctacaagcctatacttc                                                                                      <  2:930446‑M2/150‑62 (MQ=255)                                                                 ccTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTccc                                                                                      <  2:488868/147‑1 (MQ=255)                                                                 ccTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTccc                                                                                      >  1:488868/1‑147 (MQ=255)                                                                  cTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGCctgcaaggcaggtcctcgataggcctgtattatcgagtgtctgtctacaagcctatacttctatc                                                                                  <  1:278852‑M2/150‑66 (MQ=255)                                                                   ttCGCGGGATCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGctgcaaggcaggtcctcgataggcctgtattatcgagtgtctgtctacaagcctatacttctatcc                                                                                 <  2:767308‑M2/150‑67 (MQ=255)                                                                              cccGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTc                                                                      >  2:899995/1‑150 (MQ=255)                                                                               ccGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCa                                                                     >  2:1576128/1‑150 (MQ=255)                                                                                 gCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATc                                                                   <  2:1122300/150‑1 (MQ=255)                                                                                    cccACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTgg                                                                <  1:567343/150‑1 (MQ=255)                                                                                              cTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAaca                                                      <  2:559674/150‑1 (MQ=255)                                                                                                  gcCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGc                                                              <  1:634138/138‑1 (MQ=255)                                                                                                  gcCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGc                                                              >  2:634138/1‑138 (MQ=255)                                                                                                   cccgCCCCCAGGCCTGTCTACCCCCCTTAGGTGCGGGTTCACCGGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTCCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTg                                                 <  2:193463/147‑1 (MQ=38)                                                                                                   ccAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGcc                                                                                                                                      <  2:1385710/65‑1 (MQ=255)                                                                                                   ccAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGcc                                                                                                                                      >  1:1385710/1‑65 (MQ=255)                                                                                                   ccAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGATTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTg                                                 <  2:585798/150‑1 (MQ=255)                                                                                                    cAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGctgcaaggcaggtcctcgataggcctgtattatcgagtgtctgtctacaagcctatacttctatccagacaaccgaccctgcaaagcagacagc                                                     >  1:658178‑M2/1‑51 (MQ=255)                                                                                                    cAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGctgcaaggcaggtcctcgataggcctgtattatcgagtgtctgtctacaagcctatacttctatccagacaaccgaccctgcaaagcagacagc                                                     <  2:658178‑M2/145‑95 (MQ=255)                                                                                                              gCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCAcc                                                                               <  1:1047971/109‑1 (MQ=255)                                                                                                              gCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCAcc                                                                               >  2:1047971/1‑109 (MQ=255)                                                                                                              gCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGAt                                      <  2:444974/150‑1 (MQ=255)                                                                                                                  gtgtATCCCCCGTAGGAGCGGGTTCCCCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTcc                                  >  1:1621984/1‑150 (MQ=255)                                                                                                                  gtgtATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTcc                                  <  1:966026/150‑1 (MQ=255)                                                                                                                       tCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGctg                                                                                                                                                >  2:1161729‑M2/1‑32 (MQ=255)                                                                                                                       tCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGctg                                                                                                                                                <  1:1161729‑M2/35‑4 (MQ=255)                                                                                                                          cccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc                                                                                              >  2:1053526/1‑82 (MQ=255)                                                                                                                          cccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc                                                                                              <  1:1053526/82‑1 (MQ=255)                                                                                                                          cccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGc                          >  1:812047/1‑150 (MQ=255)                                                                                                                            cGTAGGAGCGGGTATGCTCGCGAAAAGctccaaagcaggtcctcgataggcctgtattatcgagtgttgccctacaagcctatacttctatccagacaaccgaccctgcaaagcagacagcatgccgcgtaaatacctcgatatccccca                        >  1:767308‑M2/1‑27 (MQ=255)                                                                                                                               aGGAGCGGGTTCACCCGCGAAGGCctgcaaggcaggtcctcgataggcctgtattatcgagtgtctgtctacaagcctatacttctatccagacaaccgaccctgcaaagcagacagcatgccgcgtaaatacctcgatatcccccagtt                     >  2:278852‑M2/1‑24 (MQ=255)                                                                                                                                   gCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCAccc                 >  1:801867/1‑150 (MQ=255)                                                                                                                                            cccGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCAc                                            >  2:162970/1‑114 (MQ=255)                                                                                                                                            cccGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCAc                                            <  1:162970/114‑1 (MQ=255)                                                                                                                                               gcgAAGGGCTGCAAAGCAGCCCCATTCAAGCCCACAGCGAGAACCCAGATGCATGAACTAACCGTTCGCCCTAGCCGCCAAGCTCATCTGGTCGGGCAAGACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCgg     >  2:597225/1‑150 (MQ=255)                                                                                                                                                 gAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCt   <  2:455389/150‑1 (MQ=255)                                                                                                                                                  aaGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCtt  <  2:1225783/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                  TAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCGGCTT  >  NC_002947/5519809‑5520103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.