New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 551987189 (1.490)7 (0.120) 7/228 NT 8.9% intergenic (‑94/‑132) PP_4852/PP_4853 AraC family transcriptional regulator/DMT superfamily permease
?NC_002947 = 5519958 58 (1.020)intergenic (‑181/‑45) PP_4852/PP_4853 AraC family transcriptional regulator/DMT superfamily permease

Only 100 of 109 total aligned reads displayed.

ACCGGGGCCGGCAGTTGGGTGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCC  >  NC_002947/5519725‑5520019
                                                                                                                                                     |                                                                                                                                                    
acCGGGGCCGGCAGTTGGGTGAACTGGGGGATATCGAGGGATTTACGCGGCATGCTGTATGCTTTG‑CAGGGTCGGTTGACTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGcc                                                                                                                                                   >  2:30638/1‑150 (MQ=255)
        cGGCAGTTGGGTGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCggg                                                                                                                                           <  1:1215105/150‑1 (MQ=255)
                gggTGAACTGGGGGATATCGAGGTATTTACGCGGCGTGCTATGCCGATCG‑GTTGTTGGGGTGTCTGGATATAGGGATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGc                                                                                                                                   >  1:284303/1‑150 (MQ=255)
                   tGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTcc                                                                                                                                >  2:32294/1‑150 (MQ=255)
                   tGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTcc                                                                                                                                >  2:219932/1‑150 (MQ=255)
                    gAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCgg                                                                                                                                            <  1:1094760/137‑1 (MQ=255)
                     aaCTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGgccttcgcgggtgaacccgctcct                                                                                                                              >  2:278852‑M1/1‑126 (MQ=255)
                     aaCTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTcgcg                                                                                                                                             >  2:1227996/1‑135 (MQ=255)
                     aaCTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTcgcg                                                                                                                                             <  1:1227996/135‑1 (MQ=255)
                        tGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTCATCAGACCCTTGA‑AAGAGATTATTGAT‑GGATGCCTTCCCTTCCAGGCCTTCGCGGGCTCCCCGCTCCCACAg                                                                                                                           <  1:30638/150‑1 (MQ=255)
                        tGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGGGCAACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCTTTGGAGcttttcgcgagcatacccgctcctacg                                                                                                                           >  1:767308‑M1/1‑123 (MQ=255)
                        tGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAg                                                                                                                           >  1:965378/1‑150 (MQ=255)
                          ggggATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACTGACACTCGATAATACAGGAAT‑CTGCCCAGCCCT‑CCTGGCAGGCCGTCGCGGGCTCCCCGCTCCCACAGGa                                                                                                                         >  1:1599912/1‑150 (MQ=255)
                           gggATATCGAGGTATTTACGCGGCATGCGGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGAt                                                                                                                        <  1:415615/150‑1 (MQ=255)
                            ggATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATc                                                                                                                       >  2:1475228/1‑150 (MQ=255)
                                atCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTgcg                                                                                                                   >  2:1266815/1‑150 (MQ=255)
                                 tCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCt                                                                                                                                                  <  2:1644513/118‑1 (MQ=255)
                                 tCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCt                                                                                                                                                  >  1:1644513/1‑118 (MQ=255)
                                   gAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCa                                                                                                                <  1:568516/150‑1 (MQ=255)
                                          ttACGCGGCATGCTGTCTGCTTTGCCCATGTTGG‑TGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCa                                                                                                         <  1:1235956/150‑1 (MQ=255)
                                                 gCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCtgt                                                                                                  <  1:564567/150‑1 (MQ=255)
                                                   aTGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGc                                                                                                      >  1:1489359/1‑144 (MQ=255)
                                                   aTGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGc                                                                                                      <  2:1489359/144‑1 (MQ=255)
                                                     gCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGcccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctg                                                                                                   <  2:658178‑M1/145‑52 (MQ=255)
                                                     gCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGcccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctg                                                                                                   >  1:658178‑M1/1‑94 (MQ=255)
                                                     gCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTAt                                                                                              <  2:205338/150‑1 (MQ=255)
                                                     gCTGTCTCCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGCATCTGCCCCAGCCTCCAGGCCtctttct                                                                                              >  2:567343/1‑144 (MQ=255)
                                                      cTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTcgcg                                                                                                                                             >  1:615178/1‑102 (MQ=255)
                                                        gTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCa                                                                                                                >  1:694957/1‑129 (MQ=255)
                                                        gTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCa                                                                                                                <  2:694957/129‑1 (MQ=255)
                                                        gTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCCCCCACAGGATTTGCGCCAGCCTCCAGGCCTGTCTGTccc                                                                                           >  2:1503470/1‑150 (MQ=255)
                                                           tGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCg                                                                                        >  1:1122300/1‑150 (MQ=255)
                                                            gCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGt                                                                                       >  1:211295/1‑150 (MQ=255)
                                                                 g‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAg                                                                                  >  2:1229248/1‑150 (MQ=255)
                                                                     gggTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCgg                                                                               <  2:965378/150‑1 (MQ=255)
                                                                        tCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGtt                                                                            >  1:548282/1‑150 (MQ=255)
                                                                               tCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCtgtg                                                                                                 >  1:1478353/1‑122 (MQ=255)
                                                                               tCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCtgtg                                                                                                 <  2:1478353/122‑1 (MQ=255)
                                                                               tCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCcgc                                                                     >  1:550408/1‑150 (MQ=255)
                                                                                 tGGATAGAAGTATAGGCTTGTAGACAGACACTCTATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTcc                                                                                                                                <  2:479421/89‑1 (MQ=255)
                                                                                 tGGATAGAAGTATAGGCTTGTAGACAGACACTCTATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTcc                                                                                                                                >  1:479421/1‑89 (MQ=255)
                                                                                 tGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGa                                                                   >  1:1383864/1‑150 (MQ=255)
                                                                                  ggATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGcccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggatcccgcgaa                                                                  <  2:767308‑M1/150‑85 (MQ=255)
                                                                                   gATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGgccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaag                                                                 <  1:278852‑M1/150‑86 (MQ=255)
                                                                                    aTAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAgg                                                                <  1:32294/150‑1 (MQ=255)
                                                                                     tAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAggg                                                               <  1:1475228/150‑1 (MQ=255)
                                                                                       gAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCTTTGCAGcccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaaggcct                                                             <  2:930446‑M1/150‑90 (MQ=255)
                                                                                       gAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGct                                                             >  1:132706‑M2/1‑148 (MQ=255)
                                                                                             taGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAag                                                       <  2:548282/150‑1 (MQ=255)
                                                                                              aGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCggg                                                                              >  2:1357043/1‑126 (MQ=255)
                                                                                              aGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCggg                                                                              <  1:1357043/126‑1 (MQ=255)
                                                                                              aGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagc                                                      >  2:436051/1‑150 (MQ=255)
                                                                                                gCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACGTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCTCCCGTATGAGCGGGTTCAACCGCTACTGGCTGAAAagcag                                                    >  2:694928/1‑150 (MQ=255)
                                                                                                  ttGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCgg                                                                               <  2:704734/121‑1 (MQ=255)
                                                                                                  ttGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCgg                                                                               >  1:704734/1‑121 (MQ=255)
                                                                                                     tAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCAc                                                                         >  2:1246817/1‑124 (MQ=255)
                                                                                                     tAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCAc                                                                         <  1:1246817/124‑1 (MQ=255)
                                                                                                        acagacaCTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagca                                                     <  1:222902/141‑1 (MQ=255)
                                                                                                        acagacaCTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagca                                                     >  2:222902/1‑141 (MQ=255)
                                                                                                          agacaCTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCAt                                              >  1:1241302/1‑146 (MQ=255)
                                                                                                          agacaCTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCAt                                              <  2:1241302/146‑1 (MQ=255)
                                                                                                          acccacTCGATAATACAGGCCT‑CT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                          <  1:895529/147‑1 (MQ=255)
                                                                                                                tCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGCCACCTGCAGGTTCCGTGGAATCACCCGATCTGCTCTGGCGTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGccccc                                    >  1:444974/1‑150 (MQ=16)
                                                                                                                 cGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCa                                   <  1:643997/150‑1 (MQ=255)
                                                                                                                  gATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCCCAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagcagc                                                   <  1:775199/133‑1 (MQ=255)
                                                                                                                  gATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTAt                                                                                              <  2:685673/90‑1 (MQ=255)
                                                                                                                  gATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTAt                                                                                              >  1:685673/1‑90 (MQ=255)
                                                                                                                  gATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGct                                                             >  2:1624864‑M2/1‑121 (MQ=255)
                                                                                                                  gATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAagcagc                                                   >  2:775199/1‑133 (MQ=255)
                                                                                                                  gATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAg                                  <  1:1503470/150‑1 (MQ=255)
                                                                                                                     aataCAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCa                                               >  2:1226800/1‑134 (MQ=255)
                                                                                                                     aataCAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCa                                               <  1:1226800/134‑1 (MQ=255)
                                                                                                                     aataCAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                          <  2:435976/139‑1 (MQ=255)
                                                                                                                      ataCAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAg                              <  2:1599912/150‑1 (MQ=255)
                                                                                                                          aGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCca                                                                                                                              <  2:334799/50‑1 (MQ=255)
                                                                                                                          aGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCca                                                                                                                              >  1:334799/1‑50 (MQ=255)
                                                                                                                            gCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCGGTGTCTCCCCCGTACCAGCGGCGTCACGCGCGAAGGTCTGCCAAGCAGCCCCAGTCCAGCCCCCTGCTAGTAACct                        >  2:84964/1‑150 (MQ=255)
                                                                                                                              cT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCctgc                      >  1:1225783/1‑150 (MQ=255)
                                                                                                                                 aT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCctgctg                    >  1:455389/1‑150 (MQ=255)
                                                                                                                                 aT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCctgctg                    >  1:559674/1‑150 (MQ=255)
                                                                                                                                    cGATGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCa                  <  1:159566/150‑1 (MQ=255)
                                                                                                                                           cTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTa           >  1:350845/1‑150 (MQ=255)
                                                                                                                                            tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGGGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGATTACCCAGCTGCATGAACTAc          >  1:585798/1‑150 (MQ=255)
                                                                                                                                            tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCCGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc          >  1:676827/1‑150 (MQ=255)
                                                                                                                                            tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTAcc                          <  1:1187860/134‑1 (MQ=255)
                                                                                                                                            tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTAcc                          >  2:1187860/1‑134 (MQ=255)
                                                                                                                                            tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc          <  1:1229248/150‑1 (MQ=255)
                                                                                                                                            tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc          <  2:550408/150‑1 (MQ=255)
                                                                                                                                            tGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAc          <  2:1383864/150‑1 (MQ=255)
                                                                                                                                             gCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTAcc         >  1:876772/1‑150 (MQ=255)
                                                                                                                                              ccTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGt                                                                             >  2:43176/1‑81 (MQ=255)
                                                                                                                                              ccTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGt                                                                             <  1:43176/81‑1 (MQ=255)
                                                                                                                                              ccTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCt        <  1:1476797/150‑1 (MQ=255)
                                                                                                                                              ccTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCt        <  2:211295/150‑1 (MQ=255)
                                                                                                                                                 tGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGtt     <  1:436051/150‑1 (MQ=255)
                                                                                                                                                   cAGcccttcgcgggtgaacccgctcctacggggga                                                                                                                      <  1:1161729‑M1/35‑33 (MQ=255)
                                                                                                                                                   cAGcccttcgcgggtgaacccgctcctacggggga                                                                                                                      >  2:1161729‑M1/1‑3 (MQ=255)
                                                                                                                                                    aGcccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaaggcctgcaaggcaggtcctcgataggcctgtattatc                             <  1:1624864‑M1/123‑122 (MQ=255)
                                                                                                                                                    aGcccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaaggcctgcaaggcaggtcctcgataggcctgtattatc                             >  2:1624864‑M1/1‑2 (MQ=255)
                                                                                                                                                    aGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGctgcaaagcaggtcctcgataggcctgtattatcgagtgtctgtctacaagcctatacttc  <  2:930446‑M2/150‑62 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
ACCGGGGCCGGCAGTTGGGTGAACTGGGGGATATCGAGGTATTTACGCGGCATGCTGTCTGCTTTG‑CAGGGTCGGTTGTCTGGATAGAAGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCT‑AT‑CGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCC  >  NC_002947/5519725‑5520019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.