New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5803276 | 51 (0.850) | 4 (0.070) | 4/230 | NT | 8.1% | coding (578/1017 nt) | PP_5081 | type IV pili biogenesis protein |
? | NC_002947 | = 5803297 | 42 (0.730) | coding (557/1017 nt) | PP_5081 | type IV pili biogenesis protein |
GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5803215‑5803276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGCCGTTGGCGCAGCT < NC_002947/5803297‑5803150 GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAG < 1:393230/85‑1 GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAG > 2:393230/1‑85 GCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAGGCACCT < 1:186086/80‑1 GCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTATCACACGGCTACGCCCGTGAAGGCACCT > 2:186086/1‑80 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGGCGTTGGCGCAGCT > 2:415669/1‑150 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGCCGTTGGCGCAGCT > 1:770775/1‑150 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCA > 1:52064/1‑116 CTATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCA < 2:52064/116‑1 GTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5803215‑5803276 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctATCACACGGCTACGCCCGTGAAGGCACCTGCAATGCTGGCGCACCTGCCGGCAAGGGCCGCAATGGCTGCGCCTGAAGTGGACCCGTTTGCGCCCGCTGCGGCGCGAGTGGCCAGCGCCGGGCTGGTCGGCGTGCCGTTGGCGCAGCT < NC_002947/5803297‑5803150 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |