New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5803276	51 (0.850)	4 (0.070)	4/230	NT	8.1%	coding (578/1017 nt)	PP_5081	type IV pili biogenesis protein
	?	NC_002947	= 5803297	42 (0.730)					coding (557/1017 nt)	PP_5081	type IV pili biogenesis protein

GCCAGGCTGCCGACCATTTCCAGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGG  >  NC_002947/5803129‑5803424                                                                                                                                                    |                                                                                                                                                     gcCAGGCTGCCGACCATTTCCAGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTc                                                                                                                                                    >  2:1638573/1‑150 (MQ=255)    aGGCTACCGACCATTTCCAGCTGAGCCAACGGCACGCAGACCAGCCCGGCGCTGGCCACTCGCGCCGAAGATGGAGCAAACGTGTGCACTTCAGTCGCAACCATTGCGGCCCTTGCCGGGAGGTTCGCCAGCATTGCAGGTCCCTTCAct                                                                                                                                                 >  2:288676/1‑149 (MQ=255)             aCCATTTCCAGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGTTGCCTTCCCCGGGGTAGcc                                                                                                                                        >  1:482835/1‑150 (MQ=255)             aCCATTTCCAGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGcc                                                                                                                                        >  2:116783/1‑150 (MQ=255)                      aGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                               >  1:770775‑M2/1‑148 (MQ=255)                      aGCTGCGCCAACGCCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                               >  2:415669‑M2/1‑148 (MQ=255)                             ccAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCaa                                                                                                                        >  2:1425603/1‑150 (MQ=255)                              cAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGATATCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAc                                                                                                                       <  1:919259/150‑1 (MQ=255)                               aaCGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAcc                                                                                                                      >  2:1326736/1‑150 (MQ=255)                                         cGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCa                                                                                                            <  1:104327/150‑1 (MQ=255)                                          gACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGAGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAg                                                                                                           <  2:992806/150‑1 (MQ=255)                                           aCCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAgg                                                                                                          <  1:1638573/150‑1 (MQ=255)                                                cccGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCaa                                                                                                     <  1:1297084/150‑1 (MQ=255)                                                   ggCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGCGACCATTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAg                                                                                                  <  2:1206674/150‑1 (MQ=255)                                                        tGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                               >  1:52064‑M2/1‑114 (MQ=255)                                                        tGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                               <  2:52064‑M2/116‑3 (MQ=255)                                                             ccTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTgg                                                                                        <  1:767192/149‑1 (MQ=255)                                                             aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGTCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTgg                                                                                        <  1:767187/150‑1 (MQ=255)                                                             aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                           <  1:1530127/115‑1 (MQ=255)                                                             aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                           >  2:1530127/1‑115 (MQ=255)                                                             aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTgg                                                                                        <  1:1142072/150‑1 (MQ=255)                                                               tCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCg                                                                                      >  2:1040203/1‑150 (MQ=255)                                                               tCGCGCCGCAGCGGGCGCAAACGGGTACACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAAGCGCGATTTCGGGTACTGCAGGGGAATATGCTTCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCg                                                                                      >  1:1012569/1‑150 (MQ=255)                                                                 gcgcCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGAt                                                                                    >  1:375839/1‑150 (MQ=255)                                                                     cgcAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCgtg                                                                                                                                     <  2:1189731/97‑1 (MQ=255)                                                                     cgcAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCgtg                                                                                                                                     >  1:1189731/1‑97 (MQ=255)                                                                      gcAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACg                                                                               <  1:1326736/150‑1 (MQ=255)                                                                             gcgcAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCa                                                                        <  2:375839/150‑1 (MQ=255)                                                                               gcAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCgtgt                                                                                                                                    >  1:380281/1‑88 (MQ=255)                                                                               gcAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCgtgt                                                                                                                                    <  2:380281/88‑1 (MQ=255)                                                                                 aaaCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCt                                                                    >  2:1348979/1‑150 (MQ=255)                                                                                  aaCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAAGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTc                                                                   >  2:1191721/1‑150 (MQ=255)                                                                                   aCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                           >  2:1565824/1‑93 (MQ=255)                                                                                   aCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                           <  1:1565824/93‑1 (MQ=255)                                                                                    cGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCAt                                                                 <  1:523288/150‑1 (MQ=255)                                                                                     gggTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATg                                                                <  1:791551/150‑1 (MQ=255)                                                                                       gTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTatcacacggctacgcccgtgaag                                                                                                                               <  1:393230‑M1/85‑24 (MQ=255)                                                                                       gTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTatcacacggctacgcccgtgaag                                                                                                                               >  2:393230‑M1/1‑62 (MQ=255)                                                                                       gTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTc                                                              <  1:10142/150‑1 (MQ=255)                                                                                                  gcgcAGCCATTGCGTCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGCACTGGAACGGTTGCCAGGCTCATGTCACCGCTGCGCa                                                   <  1:1621855/150‑1 (MQ=255)                                                                                                  gcgcAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTatcacacggctacgcccgtgaaggcacct                                                                                                                         >  2:186086‑M1/1‑51 (MQ=255)                                                                                                  gcgcAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTatcacacggctacgcccgtgaaggcacct                                                                                                                         <  1:186086‑M1/80‑30 (MQ=255)                                                                                                  gcgcAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCgt                                                                                                                                      <  2:188646/67‑1 (MQ=255)                                                                                                  gcgcAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCgt                                                                                                                                      >  1:188646/1‑67 (MQ=255)                                                                                                        ccATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATcc                                             >  1:1627267/1‑150 (MQ=255)                                                                                                          aTTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCa                                                                                              >  2:1309645/1‑99 (MQ=255)                                                                                                          aTTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCa                                                                                              <  1:1309645/99‑1 (MQ=255)                                                                                                                    ttGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAg                                                                                                           <  1:1041596/76‑1 (MQ=255)                                                                                                                    ttGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAg                                                                                                           >  2:1041596/1‑76 (MQ=255)                                                                                                                     tGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTaa                                <  2:1627267/150‑1 (MQ=255)                                                                                                                        caatggctGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCa                             <  2:889197/143‑1 (MQ=255)                                                                                                                        cGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAATCCAGGGTGGAGATCAACTGGTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCa                             >  1:603965/1‑150 (MQ=255)                                                                                                                         ggCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACTGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCAg                            <  1:116783/150‑1 (MQ=255)                                                                                                                         ggCAGGCGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAAAAGTTTAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCAg                            <  1:1348979/150‑1 (MQ=255)                                                                                                                            aGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCAgtcg                         >  1:1209129/1‑150 (MQ=255)                                                                                                                                  gcCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAc                                                                                                                       <  1:532556/50‑1 (MQ=255)                                                                                                                                  gcCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAc                                                                                                                       >  2:532556/1‑50 (MQ=255)                                                                                                                                   ccAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCAt                                                                 <  1:50395/103‑1 (MQ=255)                                                                                                                                   ccAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCAt                                                                 >  2:50395/1‑103 (MQ=255)                                                                                                                                    cAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCAGTCGTCCAGCca                 >  2:80417/1‑150 (MQ=255)                                                                                                                                     aGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAGCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGCGCCTGCACTGACCACTCGCCCAGCcac                <  2:482835/150‑1 (MQ=255)                                                                                                                                             aGGTGCCTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgc                                                                              >  2:186086‑M2/1‑29 (MQ=255)                                                                                                                                             aGGTGCCTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgc                                                                              <  1:186086‑M2/80‑52 (MQ=255)                                                                                                                                                  ccTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCg   >  1:1337120/1‑150 (MQ=255)                                                                                                                                                   cTatcacacggctacgcccgtgaaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggacccgtttgcgcccgctgcggcgcgagtggccagcgccgggctggtcggcgtggcgttggcgcagct  >  2:415669‑M1/1‑2 (MQ=255)                                                                                                                                                   cTatcacacggctacgcccgtgaaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggacccgtttgcgcccgctgcggcgcgagtggccagcgccgggctggtcggcgtgccgttggcgcagct  >  1:770775‑M1/1‑2 (MQ=255)                                                                                                                                                   cTatcacacggctacgcccgtgaaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggacccgtttgcgcccgctgcggcgcgagtggcca                                    >  1:52064‑M1/1‑2 (MQ=255)                                                                                                                                                   cTatcacacggctacgcccgtgaaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggacccgtttgcgcccgctgcggcgcgagtggcca                                    <  2:52064‑M1/116‑115 (MQ=255)                                                                                                                                                   cTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggac                                                                   >  2:393230‑M2/1‑23 (MQ=255)                                                                                                                                                   cTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggac                                                                   <  1:393230‑M2/85‑63 (MQ=255)                                                                                                                                                    |                                                                                                                                                     GCCAGGCTGCCGACCATTTCCAGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGAATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGG  >  NC_002947/5803129‑5803424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.