New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5803276	51 (0.850)	4 (0.070)	4/230	NT	8.1%	coding (578/1017 nt)	PP_5081	type IV pili biogenesis protein
	?	NC_002947	= 5803297	42 (0.730)					coding (557/1017 nt)	PP_5081	type IV pili biogenesis protein

AGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGGATAACGCCCCACCACT  >  NC_002947/5803150‑5803440                                                                                                                                                    |                                                                                                                                                 aGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                                                >  1:770775‑M2/1‑148 (MQ=255) aGCTGCGCCAACGCCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                                                >  2:415669‑M2/1‑148 (MQ=255)        ccAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCaa                                                                                                                                         >  2:1425603/1‑150 (MQ=255)         cAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGATATCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAc                                                                                                                                        <  1:919259/150‑1 (MQ=255)          aaCGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAcc                                                                                                                                       >  2:1326736/1‑150 (MQ=255)                    cGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCa                                                                                                                             <  1:104327/150‑1 (MQ=255)                     gACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGAGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAg                                                                                                                            <  2:992806/150‑1 (MQ=255)                      aCCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAgg                                                                                                                           <  1:1638573/150‑1 (MQ=255)                           cccGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCaa                                                                                                                      <  1:1297084/150‑1 (MQ=255)                              ggCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGCGACCATTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAg                                                                                                                   <  2:1206674/150‑1 (MQ=255)                                   tGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                                                <  2:52064‑M2/116‑3 (MQ=255)                                   tGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATag                                                                                                                                                >  1:52064‑M2/1‑114 (MQ=255)                                        ccTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTgg                                                                                                         <  1:767192/149‑1 (MQ=255)                                        aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGTCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTgg                                                                                                         <  1:767187/150‑1 (MQ=255)                                        aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                                            >  2:1530127/1‑115 (MQ=255)                                        aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                                            <  1:1530127/115‑1 (MQ=255)                                        aCTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTgg                                                                                                         <  1:1142072/150‑1 (MQ=255)                                          tCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCg                                                                                                       >  2:1040203/1‑150 (MQ=255)                                          tCGCGCCGCAGCGGGCGCAAACGGGTACACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAAGCGCGATTTCGGGTACTGCAGGGGAATATGCTTCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCg                                                                                                       >  1:1012569/1‑150 (MQ=255)                                            gcgcCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGAt                                                                                                     >  1:375839/1‑150 (MQ=255)                                                 gcAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACg                                                                                                <  1:1326736/150‑1 (MQ=255)                                                        gcgcAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCa                                                                                         <  2:375839/150‑1 (MQ=255)                                                            aaaCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCt                                                                                     >  2:1348979/1‑150 (MQ=255)                                                             aaCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAAGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTc                                                                                    >  2:1191721/1‑150 (MQ=255)                                                              aCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                                            >  2:1565824/1‑93 (MQ=255)                                                              aCGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAt                                                                                                                                            <  1:1565824/93‑1 (MQ=255)                                                               cGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCAt                                                                                  <  1:523288/150‑1 (MQ=255)                                                                gggTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATg                                                                                 <  1:791551/150‑1 (MQ=255)                                                                  gTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTc                                                                               <  1:10142/150‑1 (MQ=255)                                                                             gcgcAGCCATTGCGTCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGCACTGGAACGGTTGCCAGGCTCATGTCACCGCTGCGCa                                                                    <  1:1621855/150‑1 (MQ=255)                                                                                   ccATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATcc                                                             >  1:1627267/1‑150 (MQ=255)                                                                                     aTTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCa                                                                                                               <  1:1309645/99‑1 (MQ=255)                                                                                     aTTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCa                                                                                                               >  2:1309645/1‑99 (MQ=255)                                                                                               ttGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAg                                                                                                                            <  1:1041596/76‑1 (MQ=255)                                                                                               ttGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAg                                                                                                                            >  2:1041596/1‑76 (MQ=255)                                                                                                tGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTaa                                                <  2:1627267/150‑1 (MQ=255)                                                                                                   caatggctGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCa                                             <  2:889197/143‑1 (MQ=255)                                                                                                   cGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAATCCAGGGTGGAGATCAACTGGTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCa                                             >  1:603965/1‑150 (MQ=255)                                                                                                    ggCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACTGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAg                                            <  1:116783/150‑1 (MQ=255)                                                                                                    ggCAGGCGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAAAAGTTTAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAg                                            <  1:1348979/150‑1 (MQ=255)                                                                                                       aGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAgtcg                                         >  1:1209129/1‑150 (MQ=255)                                                                                                             gcCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAc                                                                                                                                        >  2:532556/1‑50 (MQ=255)                                                                                                             gcCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAAc                                                                                                                                        <  1:532556/50‑1 (MQ=255)                                                                                                              ccAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCAt                                                                                  >  2:50395/1‑103 (MQ=255)                                                                                                              ccAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCAt                                                                                  <  1:50395/103‑1 (MQ=255)                                                                                                               cAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCca                                 >  2:80417/1‑150 (MQ=255)                                                                                                                aGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCAGCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGCGCCTGCACTGACCACTCGCCCAGCcac                                <  2:482835/150‑1 (MQ=255)                                                                                                                        aGGTGCCTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgc                                                                                               >  2:186086‑M2/1‑29 (MQ=255)                                                                                                                        aGGTGCCTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgc                                                                                               <  1:186086‑M2/80‑52 (MQ=255)                                                                                                                             ccTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCg                   >  1:1337120/1‑150 (MQ=255)                                                                                                                              cTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggac                                                                                    >  2:393230‑M2/1‑23 (MQ=255)                                                                                                                              cTTCACGGGCGTAGCCGTGTGATaggcacctgcaatgctggcgcacctgccggcaagggccgcaatggctgcgcctgaagtggac                                                                                    <  1:393230‑M2/85‑63 (MQ=255)                                                                                                                                  aCGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGGATaa              <  2:1209129/150‑1 (MQ=255)                                                                                                                                  aCGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTACCACTGTCATGTCACCGCTGCGAAG‑CCTCACACCTTGTTGGAACCAGTCGTCCAGCCACAGCCGCCAGGCCGGATaa              >  1:365297/1‑150 (MQ=255)                                                                                                                                  aCGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCAATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGGATaa              >  2:504589/1‑150 (MQ=255)                                                                                                                                         tAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAGTCATCGGTG‑CTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGGATAACGCCcca       <  2:1636021/150‑1 (MQ=255)                                                                                                                                            ccGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGGATAACGCCccacca    <  2:1337120/150‑1 (MQ=255)                                                                                                                                              gtgtGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCAAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGGATAACGCCCCACCACt  >  1:1567101/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                 AGCTGCGCCAACGGCACGCCGACCAGCCCGGCGCTGGCCACTCGCGCCGCAGCGGGCGCAAACGGGTCCACTTCAGGCGCAGCCATTGCGGCCCTTGCCGGCAGGTGCGCCAGCATTGCAGGTGCCTTCACGGGCGTAGCCGTGTGATAGGCATCAACCCGCAACTGCAGGCGCAACAGTCCAGGCTGGCGATCAACGGTTGCCAGGCTCATGTCACCGCTGCGCAG‑AATCCGTGCCTGCCCTAACCAGTCGTCCAGCCACAGCCGCAAGGCCGGATAACGCCCCACCACT  >  NC_002947/5803150‑5803440

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.