New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2562122 =	64 (1.070)	6 (0.110)	6/228	NT	8.7%	coding (70/594 nt)	PP_2245	Cro/CI family transcriptional regulator
	?	NC_002947	2562148 =	65 (1.140)					coding (44/594 nt)	PP_2245	Cro/CI family transcriptional regulator

CGGAACAGCTGGGCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATA  >  NC_002947/2561974‑2562262                                                                                                                                                     |                                                                                                                                              gccaggcaattatcatttatgagaattctaatatatgagaatttagaaatgcgcaagggtccaaggtaagatgcccgaccaccgccgcatgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccagc                                                                                                                                              >  1:662637‑M1/149‑150 (MQ=255)   gAACAGCTGGGCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGgcgcgc                                                                                                                                            >  1:1589431/1‑150 (MQ=255)    aggcaattatcatttatgagaattctaatatatgagaatttagaaatgcgcaagggtccaaggtaagatgcccgaccaccgccgcatgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGcc                                                                                                                                           <  1:1622057‑M1/5‑1 (MQ=255)     ggcaattatcatttatgagaattctaatatatgagaatttagaaatgcgcaagggtccaaggtaagatgcccgaccaccgccgcatgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGCCt                                                                                                                                          >  2:989262‑M1/145‑150 (MQ=255)      cAGCTGGGCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCtt                                                                                                                                         >  1:507450/1‑150 (MQ=255)      cAGCTGGGAAATATCGACATTCCGCGCCAGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCtt                                                                                                                                         <  1:618243/150‑1 (MQ=255)       aGCTGGGCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGTGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTg                                                                                                                                        <  1:297496/150‑1 (MQ=255)          tGGGCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTgcgc                                                                                                                                     >  1:1502226/1‑150 (MQ=255)          tGGGCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGCGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTgcgc                                                                                                                                     >  2:236243/1‑150 (MQ=255)            ggCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCAc                                                                                                                                   <  1:1366013/150‑1 (MQ=255)                         ttCAGCGCCCGCGCAGCAGCGGCTAGTTTTCCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACACCGTGGACAGCGGCACGCAACCGGGGCACCCTGATGGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑gcgc                                                                                                                     >  2:862666/1‑150 (MQ=255)                            aGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGCGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTgg                                                                                                                  <  1:236243/150‑1 (MQ=255)                                 ccGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTCGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCcgac                                                                                                             <  2:163446/150‑1 (MQ=255)                                    cgcAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCCGTTCCACATTCGACAACTTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCgacgac                                                                                                          <  1:1601568/150‑1 (MQ=255)                                              gCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCa                                                                                                >  2:1008276/1‑150 (MQ=255)                                                    ttttCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTgg                                                                                          <  1:1497602/150‑1 (MQ=255)                                                    ttttCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTgg                                                                                          <  1:877391/150‑1 (MQ=255)                                                         aTAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAag                                                                                     >  1:1298001/1‑150 (MQ=255)                                                          tAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAaga                                                                                    <  1:1008276/150‑1 (MQ=255)                                                               gACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAg                                                                                                                          <  1:96517/108‑1 (MQ=255)                                                               gACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAg                                                                                                                          >  2:96517/1‑108 (MQ=255)                                                                 ggtaagatgcccgaccaccgccgcatgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGcc                                                                                                                >  2:1345753‑M1/85‑115 (MQ=255)                                                                 ggtaagatgcccgaccaccgccgcatgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGcc                                                                                                                <  1:1345753‑M1/31‑1 (MQ=255)                                                                 ccGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCgg                                                                             <  2:507450/150‑1 (MQ=255)                                                                 ccGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCgg                                                                             <  1:587413/150‑1 (MQ=255)                                                                    acacCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCa                                                                          >  2:1549328/1‑150 (MQ=255)                                                                    acacCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACAGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCa                                                                          <  2:1102602/150‑1 (MQ=255)                                                                         tgtgCCAGTTCCATCTTCGACAACGTGGACAGCGGCACACCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAg                                                                     <  2:1208667/150‑1 (MQ=255)                                                                         gcccgaccaccgccgcatgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGCCTTGCGCACCTGGCGCAG‑GCGCTgg                                                                                                                  >  2:1239997‑M1/77‑105 (MQ=255)                                                                         gcccgaccaccgccgcatgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGCCTTGCGCACCTGGCGCAG‑GCGCTgg                                                                                                                  <  1:1239997‑M1/29‑1 (MQ=255)                                                                            gCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGa                                                                  <  2:1589431/150‑1 (MQ=255)                                                                                 ttCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTggg                                                                                         >  2:1256468/1‑122 (MQ=255)                                                                                 ttCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTggg                                                                                         <  1:1256468/122‑1 (MQ=255)                                                                                      tCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTg                                                                                                                   >  2:1045425/1‑91 (MQ=255)                                                                                      tCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTg                                                                                                                   <  1:1045425/91‑1 (MQ=255)                                                                                      tCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTgg                                                                                          <  2:1552942/116‑1 (MQ=255)                                                                                      tCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTgg                                                                                          >  1:1552942/1‑116 (MQ=255)                                                                                       cTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATgc                                                       >  2:138944/1‑150 (MQ=255)                                                                                        ttCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATgcg                                                      >  2:281987/1‑150 (MQ=255)                                                                                          tgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGCCTTGCGCACCTGGCGCa                                                                                                                           <  1:936276‑M1/21‑1 (MQ=255)                                                                                          tgccgagatccctgaatgcccgcagctcttccccagcttgaccgtgccgtcgtcggccaGCGCCTTGCGCACCTGGCGCa                                                                                                                           >  2:936276‑M1/60‑80 (MQ=255)                                                                                          cGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATgcggc                                                    <  1:870455/150‑1 (MQ=255)                                                                                            aCAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGacgacg                                                                                                         <  1:328861/95‑1 (MQ=255)                                                                                            aCAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGacgacg                                                                                                         >  2:328861/1‑95 (MQ=255)                                                                                            aCAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAg                                                                     <  1:629646/131‑1 (MQ=255)                                                                                            aCAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAg                                                                     >  2:629646/1‑131 (MQ=255)                                                                                                   ggACAGCGGCACGCCACCGGATTCGGAGAATTTCCTGAGGGTCATCTGGCGAGCCTTGGCCACCTGGAGCAG‑GCGCTGGCCGACGACGGTACCGTCAAGGTGGGGAAGAGCTGCGGTCATCCAGGGATCTCGGCATGCGGCGGTGGTCgg                                           <  2:652014/150‑1 (MQ=255)                                                                                                       aGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCAt                                       >  1:6485/1‑150 (MQ=255)                                                                                                        gCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCCGCGGGCATTCCGGCAGCGTTGCATGCGGCGGTGGTCGGGCATc                                      <  1:862666/150‑1 (MQ=255)                                                                                                         cGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCgg                                                            <  2:551850/127‑1 (MQ=255)                                                                                                         cGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCgg                                                            >  1:551850/1‑127 (MQ=255)                                                                                                           gCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAgg                                                                    <  1:1342862/117‑1 (MQ=255)                                                                                                           gCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAgg                                                                    >  2:1342862/1‑117 (MQ=255)                                                                                                           gCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGc                                         >  2:122046/1‑144 (MQ=255)                                                                                                           gCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGc                                         <  1:122046/144‑1 (MQ=255)                                                                                                            cACGCCAGTGGCTTCGGACAATTGCTTGAGCGTCATCTTGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTAc                                  <  2:1502226/150‑1 (MQ=255)                                                                                                            cACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTAc                                  >  1:1138643/1‑150 (MQ=255)                                                                                                              cGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCt                                >  2:44818/1‑150 (MQ=255)                                                                                                               gCCACTGGCTTCGGACAATTGCTTTAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGACCGACTACGGCGCGGTCGAGCAGGGGTAGGGCAGCGGGCATTCAGGGTTCTCGGTATACGGCGTTGGTCGGGCATCTTACCtt                               >  1:1502968/1‑150 (MQ=255)                                                                                                               gCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCtt                               <  2:1138643/150‑1 (MQ=255)                                                                                                                 cACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTgg                             >  2:1157945/1‑150 (MQ=255)                                                                                                                   cTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGAc                           >  1:1431735/1‑150 (MQ=255)                                                                                                                       cTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCtt                       <  1:138944/150‑1 (MQ=255)                                                                                                                       cTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCCCTGG‑AGTGTGCTTTTCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCtt                       <  2:1276725/150‑1 (MQ=255)                                                                                                                        ttCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCggg                                                                            >  2:83822/1‑96 (MQ=255)                                                                                                                        ttCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCggg                                                                            <  1:83822/96‑1 (MQ=255)                                                                                                                        ttCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGAGCCtgg                      >  2:52839/1‑148 (MQ=255)                                                                                                                             aCAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCAt                 <  1:1549328/150‑1 (MQ=255)                                                                                                                                aTTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGc                                                                               >  1:1404266/1‑85 (MQ=255)                                                                                                                                aTTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGc                                                                               <  2:1404266/85‑1 (MQ=255)                                                                                                                                     ttGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAag                                                                                     <  2:1321719/74‑1 (MQ=255)                                                                                                                                     ttGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAag                                                                                     >  1:1321719/1‑74 (MQ=255)                                                                                                                                          ggTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCa    >  1:695823/1‑150 (MQ=255)                                                                                                                                            tCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCata  >  2:1622057/1‑150 (MQ=255)                                                                                                                                                   gcgcgcCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCt                                                                                            <  2:314939/53‑1 (MQ=255)                                                                                                                                                   gcgcgcCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCt                                                                                            >  1:314939/1‑53 (MQ=255)                                                                                                                                                   gcgcgcCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATg                                                        <  2:1242535/89‑1 (MQ=255)                                                                                                                                                   gcgcgcCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATg                                                        >  1:1242535/1‑89 (MQ=255)                                                                                                                                                     |                                                                                                                                              CGGAACAGCTGGGCAATATCGACATTCAGCGCCCGCGCAGCAGCGGCCAGTTTTTCATAGCTGACCGACACCTGTGCCAGTTCCATCTTCGACAACGTGGACAGCGGCACGCCACTGGCTTCGGACAATTGCTTGAGGGTCATCTGGCGCGCCTTGCGCACCTGGCGCAG‑GCGCTGGCCGACGACGGCACGGTCAAGCTGGGGAAGAGCTGCGGGCATTCAGGGATCTCGGCATGCGGCGGTGGTCGGGCATCTTACCTTGGACCCTTGCGCATTTCTAAATTCTCATA  >  NC_002947/2561974‑2562262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.