New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6155257 =	15 (0.250)	7 (0.120)	7/234	NT	22.7%	intergenic (‑11/+195)	PP_5398/PP_5399	transposase/hypothetical protein
	?	NC_002947	6155313 =	33 (0.570)					intergenic (‑67/+139)	PP_5398/PP_5399	transposase/hypothetical protein

AAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGCTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGG  >  NC_002947/6155109‑6155405                                                                                                                                                     |                                                                                                                                                     gccgtctgaatgcagcagcttggaaactttgaggaaattctgcagtacttccgcacctgatttccctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGc                                                                                                                                                     <  1:1031057‑M1/2‑1 (MQ=255)  gcgtctgaatgcagcagcttggaaactttgaggaaattctgcagtacttccgcacctgatttccctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCa                                                                                                                                                    <  1:1471071‑M1/3‑1 (MQ=255)             cagcagcttggaaactttgaggaaattctgcagtacttccgcacctgatttccctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAGTAAGGGTGAt                                                                                                                                         >  2:1471071‑M1/137‑150 (MQ=255)              agcagcttggaaactttgaggaaattctgcagtacttccgcacctgatttccctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATc                                                                                                                                        <  2:994242‑M1/15‑1 (MQ=255)                                                           gatttccctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGa                                                                                           >  1:994242‑M1/91‑150 (MQ=255)                                                           gatttccctgcatccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGa                                                                                           <  2:1216602‑M1/60‑1 (MQ=255)                                                            atttccctgcatccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAg                                                                                          >  1:1216602‑M1/90‑150 (MQ=255)                                                                 cctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGccc                                                                                                      >  2:522696‑M1/85‑133 (MQ=255)                                                                 cctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGccc                                                                                                      <  1:522696‑M1/49‑1 (MQ=255)                                                                                              gACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCt                                                        <  2:227243/150‑1 (MQ=33)                                                                                                ccTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGt                                                      <  1:795427/150‑1 (MQ=35)                                                                                                  tGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                    >  1:758062/1‑150 (MQ=37)                                                                                                       tttGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGCAGGGGACTTCGCCGGACGCTTACTCGCTGTATGCGtt                                               >  1:170787/1‑150 (MQ=255)                                                                                                        ttGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTc                                              <  1:411418/150‑1 (MQ=255)                                                                                                           aaCGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCgag                                           >  1:435077/1‑150 (MQ=255)                                                                                                                 ttCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGa                                     <  2:1411432/150‑1 (MQ=255)                                                                                                                    ggATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCa                                  >  1:1384494/1‑150 (MQ=255)                                                                                                                          gagCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                    >  2:1071793/1‑126 (MQ=38)                                                                                                                          gagCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTAt                                                    <  1:1071793/126‑1 (MQ=38)                                                                                                                          gagCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTg                            >  1:1064673/1‑150 (MQ=255)                                                                                                                                       gcATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACg               >  2:1025038/1‑150 (MQ=255)                                                                                                                                         aTGTAAATCCTGGTAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCa             <  1:274056/150‑1 (MQ=255)                                                                                                                                          tGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAg            <  1:1397665/150‑1 (MQ=255)                                                                                                                                           ggAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAgg           <  2:855243/150‑1 (MQ=255)                                                                                                                                                 ccTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATc     <  1:1173739/150‑1 (MQ=255)                                                                                                                                                   tGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAg   >  2:1031057/1‑150 (MQ=255)                                                                                                                                                    ggCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTa                          <  1:683333/126‑1 (MQ=255)                                                                                                                                                    ggCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTa                          >  2:683333/1‑126 (MQ=255)                                                                                                                                                    ggCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAgg  <  1:1025038/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AAGCGGCAGCCATTTGCGGATGACGTTGGCATTGATGCCGTGGCTGATGGCGACACTGGACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGACGCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGG  >  NC_002947/6155109‑6155405

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.