New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6155257 =	15 (0.250)	7 (0.120)	7/234	NT	22.7%	intergenic (‑11/+195)	PP_5398/PP_5399	transposase/hypothetical protein
	?	NC_002947	6155313 =	33 (0.570)					intergenic (‑67/+139)	PP_5398/PP_5399	transposase/hypothetical protein

GACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGACGGCCA  >  NC_002947/6155167‑6155462                                                                                                                                                   |                                                                                                                                                       gatttccctgcgtccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGa                                                                                                                                                     >  1:994242‑M1/91‑150 (MQ=255) gatttccctgcatccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGa                                                                                                                                                     <  2:1216602‑M1/60‑1 (MQ=255)  atttccctgcatccagaaagtacaactctgctcccgtctcgaacgcatacagcgagtaagcgtccggggaactcaccttccgaactccaGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAg                                                                                                                                                    >  1:1216602‑M1/90‑150 (MQ=255)                                    gACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCt                                                                                                                 <  2:227243/150‑1 (MQ=33)                                      ccTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGt                                                                                                               <  1:795427/150‑1 (MQ=35)                                        tGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTAt                                                                                                             >  1:758062/1‑150 (MQ=37)                                             tttGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGCAGGGGACTTCGCCGGAC‑GCTTACTCGCTGTATGCGtt                                                                                                        >  1:170787/1‑150 (MQ=255)                                              ttGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTc                                                                                                       <  1:411418/150‑1 (MQ=255)                                                 aaCGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCgag                                                                                                    >  1:435077/1‑150 (MQ=255)                                                       ttCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGa                                                                                              <  2:1411432/150‑1 (MQ=255)                                                          ggATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCa                                                                                           >  1:1384494/1‑150 (MQ=255)                                                                gagCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTAt                                                                                                             <  1:1071793/126‑1 (MQ=38)                                                                gagCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTAt                                                                                                             >  2:1071793/1‑126 (MQ=38)                                                                gagCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTg                                                                                     >  1:1064673/1‑150 (MQ=255)                                                                             gcATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACg                                                                        >  2:1025038/1‑150 (MQ=255)                                                                               aTGTAAATCCTGGTAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCa                                                                      <  1:274056/150‑1 (MQ=255)                                                                                tGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAg                                                                     <  1:1397665/150‑1 (MQ=255)                                                                                 ggAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAgg                                                                    <  2:855243/150‑1 (MQ=255)                                                                                      ctccagcattaagggcgatggtgtccgcgtatttttaagcggacgcgatcacccttattgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGATGCAGGGAAAt                                                               >  1:1216602‑M2/62‑150 (MQ=255)                                                                                       tccagcattaagggcgatggtgtccgcgtatttttaagcggacgcgatcacccttattgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGATGCAGGGAAATc                                                              <  2:1216602‑M2/90‑1 (MQ=255)                                                                                       tccagcattaagggcgatggtgtccgcgtatttttaagcggacgcgatcacccttattgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATc                                                              >  1:994242‑M2/61‑150 (MQ=255)                                                                                       ccTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATc                                                              <  1:1173739/150‑1 (MQ=255)                                                                                         tGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAg                                                            >  2:1031057/1‑150 (MQ=255)                                                                                          ggCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTa                                                                                   >  2:683333/1‑126 (MQ=255)                                                                                          ggCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTa                                                                                   <  1:683333/126‑1 (MQ=255)                                                                                          ggCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAgg                                                           <  1:1025038/150‑1 (MQ=255)                                                                                             AATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAg                                                                                                                                       >  1:1079424‑M1/1‑72 (MQ=255)                                                                                             AATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAg                                                                                                                                       <  2:1079424‑M1/72‑1 (MQ=255)                                                                                             AATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGc                                                        <  2:567382‑M1/150‑1 (MQ=255)                                                                                              aTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCg                                                       >  1:1270568/1‑150 (MQ=255)                                                                                              aTAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCg                                                       >  2:1116135/1‑150 (MQ=255)                                                                                                  gggcgatggtgtccgcgtatttttaagcggacgcgatcacccttattgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAgg                                                                    <  1:522696‑M2/84‑1 (MQ=255)                                                                                                  gggcgatggtgtccgcgtatttttaagcggacgcgatcacccttattgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAgg                                                                    >  2:522696‑M2/50‑133 (MQ=255)                                                                                                    gTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTa                                                 <  2:435077/150‑1 (MQ=255)                                                                                                         cgctTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCa                                            <  1:273305/150‑1 (MQ=255)                                                                                                                gCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTc                                     <  2:1345429/150‑1 (MQ=255)                                                                                                                            gcgGACACCATCGCCCTTAATGCTGGAGTTCGGAAGATGCCAAAAACGAACAGCTT‑CAGGGTGTTTGCGGTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTcc                         >  1:444898/1‑150 (MQ=25)                                                                                                                                acacCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGaa                                                    <  1:1586801/119‑1 (MQ=255)                                                                                                                                acacCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGaa                                                    >  2:1586801/1‑119 (MQ=255)                                                                                                                                    gatcacccttattgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAgctgct                 <  2:994242‑M2/135‑1 (MQ=255)                                                                                                                                    cacagCCCTTAATCCTGGAGGTGAGCAGGTCAGTTCCCCGTAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGTACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAgctgct                 <  2:616008/146‑1 (MQ=255)                                                                                                                                    cATCGTCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAgctgct                 <  2:170787/150‑1 (MQ=255)                                                                                                                                    cATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAgctgct                 >  2:1255512/1‑150 (MQ=255)                                                                                                                                     atcacccttactgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGctgctg                >  2:1471071‑M2/15‑150 (MQ=255)                                                                                                                                          ccTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTg                                                                            >  1:1214728/1‑85 (MQ=255)                                                                                                                                          ccTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTg                                                                            <  2:1214728/85‑1 (MQ=255)                                                                                                                                           cTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTc                                     <  2:1000689/123‑1 (MQ=255)                                                                                                                                           cTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTc                                     >  1:1000689/1‑123 (MQ=255)                                                                                                                                           cTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCa          >  2:1617584/1‑150 (MQ=255)                                                                                                                                             tAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGa        <  1:1617584/150‑1 (MQ=255)                                                                                                                                              aaTGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGAc       >  1:299318/1‑150 (MQ=255)                                                                                                                                              aaTGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGAc       >  2:839703/1‑150 (MQ=255)                                                                                                                                                tgcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGAcgc     <  1:1471071‑M2/147‑2 (MQ=255)                                                                                                                                                 gcTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGACGGc    <  1:1031057‑M2/148‑1 (MQ=255)                                                                                                                                                   tGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGACGGCCa  <  1:567382/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                       GACACGGTTGCGCCAGGTTGCAGGCATTCCTGAACGACCTGGGCTTTGAACGGTTTCGGATAAGAGCTTCGTTGGCGCATGGAAATCCTGGCAATAAGGGTGATCGCGTCCGCTTAAAAATACGCGGACACCATCGCCCTTAATGCTGGAGTTCGGAAGGTGAGTTCCCCGGAC‑GCTTACTCGCTGTATGCGTTCGAGACGGGAGCAGAGTTGTACTTTCTGGACGCAGGGAAATCAGGTGCGGAAGTACTGCAGAATTTCCTCAAAGTTTCCAAGCTGCTGCATTCAGACGGCCA  >  NC_002947/6155167‑6155462

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.