New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	387994 =	47 (0.790)	4 (0.070)	4/232	NT	8.5%	coding (1131/1254 nt)	glyA‑I	serine hydroxymethyltransferase
	?	NC_002947	388011 =	41 (0.710)					coding (1148/1254 nt)	glyA‑I	serine hydroxymethyltransferase

ACGCCGCCCTGGGTCGTGCGCATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTCGGGCTTCGGCC  >  NC_002947/387864‑388157                                                                                                                                                    |                                                                                                                                                   acgccgCCCTGGGTCGTGCGCATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCctggctg                                                                                                                                                  <  1:31390/150‑1 (MQ=255) acgccgCCCTGGGTCGTGCGCATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACCTCGGGCCTGCGTATCGCCACCCCCGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCctggctg                                                                                                                                                  >  2:579699/1‑150 (MQ=255)    ccgccCTGGGTCGTGCGCATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCctggctggct                                                                                                                                               <  2:1399721/150‑1 (MQ=255)        ccTGGGTCGTGCGCATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGAt                                                                                                                                           >  1:317518/1‑150 (MQ=255)                  gcgcATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGCCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATc                                                                                                                                 <  1:785625/150‑1 (MQ=255)                                 aacaaGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGt                                                                                                                  >  1:912201/1‑150 (MQ=255)                                 aacaaGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGt                                                                                                                  >  2:1332515/1‑150 (MQ=255)                                   caaGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGa                                                                                                                >  2:473578/1‑150 (MQ=255)                                      ggaaatctgcgcacagggccgcgacgttcttcgccacatcggcttcgacgtctgcgtcaccgaggttgtcgaggatgtcgcaaatccagccagccagtgcgtggccctggCTGGCTGGATTTGc                                                                                                                                       <  2:480668‑M2/14‑1 (MQ=255)                                      ggaaatctgcgcacagggccgcgacgttcttcgccacatcggcttcgacgtctgcgtcaccgaggttgtcgaggatgtcgcaaatccagccagccagtgcgtggccctggCTGGCTGGATTTGc                                                                                                                                       >  1:480668‑M2/111‑124 (MQ=255)                                                ccGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGaa                                                                                                   <  2:273942/150‑1 (MQ=255)                                                  gAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCCCCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGc                                                                                                 <  2:1119193/150‑1 (MQ=255)                                                  gAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGc                                                                                                 >  2:1311062/1‑150 (MQ=255)                                                   aaCGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTg                                                                                                                 >  1:404317/1‑133 (MQ=255)                                                   aaCGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTg                                                                                                                 <  2:404317/133‑1 (MQ=255)                                                                 gCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCgaagaa                                                                                  >  1:219854/1‑150 (MQ=255)                                                                 gCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCgaagaa                                                                                  >  2:795722/1‑150 (MQ=255)                                                                                    cTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACg                                                                                                              >  1:968597/1‑103 (MQ=255)                                                                                    cTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACg                                                                                                              <  2:968597/103‑1 (MQ=255)                                                                                           tCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTcc                                                        >  1:290037/1‑150 (MQ=255)                                                                                           tCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTcc                                                        >  2:296552/1‑150 (MQ=255)                                                                                             ggCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCt                                                      <  1:296552/150‑1 (MQ=255)                                                                                             ggCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCt                                                      <  1:1539185/150‑1 (MQ=255)                                                                                              gCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTg                                                     >  2:1509498/1‑150 (MQ=255)                                                                                                accgaggttgtcgaggatgtcgcaaatccagccagCCAGTGCGTGGCCctggctggct                                                                                                                                               <  2:1357902‑M1/23‑1 (MQ=255)                                                                                                accgaggttgtcgaggatgtcgcaaatccagccagCCAGTGCGTGGCCctggctggct                                                                                                                                               >  1:1357902‑M1/36‑58 (MQ=255)                                                                                                   ccGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACACCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCtcc                                                >  2:1003513/1‑148 (MQ=255)                                                                                                     ggCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGAc                                                                                                               >  1:726524/1‑85 (MQ=255)                                                                                                     ggCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGAc                                                                                                               <  2:726524/85‑1 (MQ=255)                                                                                                      gCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGc                                             >  2:1069343/1‑150 (MQ=255)                                                                                                         gTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGa                                          <  1:795722/150‑1 (MQ=255)                                                                                                          ccaccacCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGAGCAGATTTCCCTGCCTACCGCTGAg                                         >  1:1559440/2‑150 (MQ=255)                                                                                                             ccaccCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTgg                                      >  1:882025/1‑150 (MQ=255)                                                                                                              caccCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGa                                     <  1:1332515/150‑1 (MQ=255)                                                                                                              caccCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGa                                     <  1:473578/150‑1 (MQ=255)                                                                                                               ccccACGGATTCAAGGTCGCCCAGTGCGGGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAg                                    <  2:912201/149‑1 (MQ=255)                                                                                                               accCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAg                                    <  1:1509498/150‑1 (MQ=255)                                                                                                                 ccGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTc                                  >  1:485730/1‑150 (MQ=255)                                                                                                                     ggCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTcacac                              <  1:1311062/150‑1 (MQ=255)                                                                                                                     gcaaatccagccagCCAGGGCCACGCACTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTcc                                                        <  2:480668‑M1/110‑1 (MQ=255)                                                                                                                     gcaaatccagccagCCAGGGCCACGCACTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTcc                                                        >  1:480668‑M1/15‑124 (MQ=255)                                                                                                                       cTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCacacac                            >  2:1545758/1‑150 (MQ=255)                                                                                                                        ttCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGt                                        >  2:1013536/1‑137 (MQ=255)                                                                                                                        ttCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGt                                        <  1:1013536/137‑1 (MQ=255)                                                                                                                            aGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGc                       <  2:1260496/150‑1 (MQ=255)                                                                                                                             agccagccagggccacgcactggCTGGCTGGATTTGCGACATCCTCGACAACCTCGGt                                                                                                                  >  1:1357902‑M2/24‑58 (MQ=255)                                                                                                                             agccagccagggccacgcactggCTGGCTGGATTTGCGACATCCTCGACAACCTCGGt                                                                                                                  <  2:1357902‑M2/35‑1 (MQ=255)                                                                                                                                 gCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACg                   <  1:1029264/149‑1 (MQ=255)                                                                                                                                 gCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACg                   >  2:1029264/1‑149 (MQ=255)                                                                                                                                      GTGCGTGGCCCTAGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTc             >  1:579699‑M1/1‑150 (MQ=255)                                                                                                                                       tGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTCg            <  1:1069343/150‑1 (MQ=255)                                                                                                                                          gTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTCGGGc         >  2:1162802/1‑150 (MQ=255)                                                                                                                                            ggCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAAc                                                                                 >  1:602790/1‑76 (MQ=255)                                                                                                                                            ggCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAAc                                                                                 <  2:602790/76‑1 (MQ=255)                                                                                                                                            ggCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTCGGGCtt       <  2:290037/150‑1 (MQ=255)                                                                                                                                              cccTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGt                                        >  1:50900/1‑115 (MQ=255)                                                                                                                                              cccTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGt                                        <  2:50900/115‑1 (MQ=255)                                                                                                                                              cccTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCaa                     <  2:954643/134‑1 (MQ=255)                                                                                                                                              cccTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCaa                     >  1:954643/1‑134 (MQ=255)                                                                                                                                                ctggCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTCGGGCTTCGGc   >  2:1054544‑M2/5‑150 (MQ=255)                                                                                                                                                 tggCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTCGGGCTTCGGcc  <  2:219854‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ACGCCGCCCTGGGTCGTGCGCATATCACCGTCAACAAGAACGCCGTGCCGAACGACCCGCAGTCGCCGTTCGTCACTTCGGGCCTGCGTATCGGCACCCCGGCCGTCACCACCCGCGGCTTCAAGGTCGCCCAGTGCGTGGCCCTGGCTGGCTGGATTTGCGACATCCTCGACAACCTCGGTGACGCAGACGTCGAAGCCGATGTGGCGAAGAACGTCGCGGCCCTGTGCGCAGATTTCCCTGTCTACCGCTGAGTGGAGTCACACACCATGCAACGTTACTCGGGCTTCGGCC  >  NC_002947/387864‑388157

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.