New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 39435661 (0.690)4 (0.060) 4/198 NT 6.3% intergenic (+36/‑266) purU‑I/fdhA formyltetrahydrofolate deformylase/formaldehyde dehydrogenase
?NC_002947 = 394400 70 (1.000)intergenic (+80/‑222) purU‑I/fdhA formyltetrahydrofolate deformylase/formaldehyde dehydrogenase

TATCCCGAAGACCTGATTGCCAAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/394201‑394356
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggctaaagccgctcTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATACCCCACCGCC  <  NC_002947/394400‑394257
                                                                                                                                                                                                                                                                                                            
TATCCCGAAGACCTGATTGCCAAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAG                                                                                                                                                        >  1:1259378/1‑150
 ttctCGAAGTCCTGAGTGCCAGAGGGCGGGAGATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCAGACTGTCGTTCTGTAATAACCGGTACCGGCCGCTTCGCGGCTAAAGC                                                                                                                                                       <  2:818496/146‑1
    caGAAGACGTGATAGCCAAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGC                                                                                                                                                    <  1:2047692/148‑1
    CCGAAGACCTGATTGCCAAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGC                                                                                                                                                    >  1:31358/1‑150
     CGAAGACCTGATTGCCAAAGGGCGGGATATCGAATGCTTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAGCGAAAGCGTCTTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCT                                                                                                                                                   >  2:1229520/1‑150
              GATTGCCAAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCC                                                                                                                                                      <  2:391551/138‑1
              GATTGCCAAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCC                                                                                                                                                      >  1:391551/1‑138
                     AAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCA                                                                                                                                   >  1:2190325/1‑150
                      AAGGGCGGGATATCGAATGCCTGACATTGGGGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAA                                                                                                                                                         <  2:553290/127‑1
                      AAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAA                                                                                                                                                         >  1:553290/1‑127
                                               ATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGG                                                                                                                                                              >  2:661626/1‑97
                                               ATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGG                                                                                                                                                              <  1:661626/97‑1
                                                         GCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGC                                                                                               <  2:2190325/150‑1
                                                         GCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCT                                                                                                                                                                    <  1:807586/81‑1
                                                         GCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCT                                                                                                                                                                    >  2:807586/1‑81
                                                                        ATCGAACGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTC                                                                                                                                                  >  1:1096845/1‑84
                                                                        ATCGAACGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTC                                                                                                                                                  <  2:1096845/84‑1
                                                                                           TGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAG                                                                                                                                                        <  1:1557442/59‑1
                                                                                           TGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAG                                                                                                                                                        >  2:1557442/1‑59
                                                                                                  CAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAG                                                                                                   >  2:440578/1‑105
                                                                                                  CAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAG                                                                                                   <  1:440578/105‑1
                                                                                                                                   GGCCTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACTAACCCGCGGGCTGTGCTGTACCTGTAGGATCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTC                     <  2:926130/150‑1
                                                                                                                                     CCTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCC                                                                             <  2:1828899/92‑1
                                                                                                                                     CCTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCC                                                                             >  1:1828899/1‑92
                                                                                                                                      CTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACCCCCGTCGCTCGAT                  <  2:1560243/150‑1
                                                                                                                                      CTCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGAT                  <  2:2304632/150‑1
                                                                                                                                       TCTTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATG                 <  1:197691/150‑1
                                                                                                                                         TTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGA                                                                                                    >  2:160175/1‑65
                                                                                                                                         TTCGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGA                                                                                                    <  1:160175/65‑1
                                                                                                                                           CGCGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCCCGCTGTGct             >  2:840179/1‑148
                                                                                                                                             CGGCTAAAGCCGCTCTTACGGGTGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATAC           <  2:153331/150‑1
                                                                                                                                             CGGCTAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATAC           <  2:586442/150‑1
                                                                                                                                                 TAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAG                                    <  2:2193803/121‑1
                                                                                                                                                 TAAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAG                                    >  1:2193803/1‑121
                                                                                                                                                  AAAGCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATACCCCAC      >  2:953173/1‑150
                                                                                                                                                     GCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACA                                                     >  2:2125831/1‑100
                                                                                                                                                     GCCGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACA                                                     <  1:2125831/100‑1
                                                                                                                                                      CCGCTCTTACGGGGGACCGCACCAAGAGATAGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATACCCCACCGCC  >  1:1229520/1‑150
                                                                                                                                                       CGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATACC          >  2:2187260/1‑141
                                                                                                                                                       CGCTCTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATACC          <  1:2187260/141‑1
                                                                                                                                                                                                                                                                                                            
TATCCCGAAGACCTGATTGCCAAAGGGCGGGATATCGAATGCCTGACATTGGCGCGGGCGGTGGGGTATCACATCGAGCGACGGGTGTTCCTGAACGCCAACCGGACTGTCGTTCTGTAATAACCGGTACCGGCCTCTTCGCGGCTAAAGCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/394201‑394356
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctcttcgcggctaaagccgctcTTACGGGGGACCGCACCAACCCGAGGGCTGTGCTGTACCTGTAGGAGCGGCTTTAGCCGCGAAGAGGCCGGTACCGGTTATTACAGAACGACAGTCCGGTTGGCGTTCAGGAACACCCGTCGCTCGATGTGATACCCCACCGCC  <  NC_002947/394400‑394257

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.