| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1465319 = | 83 (0.940) | 6 (0.070) | 6/240 | NT | 6.8% | coding (306/1440 nt) | algX | alginate biosynthesis protein AlgX |
| ? | NC_002947 | 1465346 = | 84 (0.980) | coding (279/1440 nt) | algX | alginate biosynthesis protein AlgX | |||||
GCTGTTCCGCACCCGCGAAGACCTGCGCACCGAGTTCAACACCACCCCAGCCGGCTACAAACGCCTGCAGCAAGTGCACGACGCGTTCAAGAAACGTGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1465421‑1465319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGCGTGGTGAAGTTTTGCTGATAGCGGGTGGTGTAGCGGCTTGCATCGTG > NC_002947/1465346‑1465492 GCTGTTCCGCACCCGCGAAGACCTGCGCACCGAGTTCAACACCACCCCAGCCGGCTACAAACGCCTGCAGCAAGTGCACGCCACGTTTCTTGAACGCGTCGTGCACTTGCTGCAGG > 1:1232815/1‑116GCTGTTCCGCACCCGCGAAGACCTGCGCACCGAGTTCAACACCACCCCAGCCGGCTACAAACGCCTGCAGCAAGTGCACGCCACGTTTCTTGAACGCGTCGTGCACTTGCTGCAGG < 2:1232815/116‑1 GCAGCAAGTGCACGACGCGTTCAAGAAACGTGGCGTGCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGCGTGGTGAAGTTTT > 1:2205514/1‑150 ACGACGCGTTCAAGAAACGTGGCGTGCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGCGTGGTGAAGTTTTGCTGATAGCGG > 2:1507642/1‑150 GCGTTCAAGAAACGTGGCGTGCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGCGTGGTGAAGTTTTGCTGATAGCGGGTGGT < 1:1507642/150‑1 AACGTGGCGTGCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGCGTGGTGAAGTTTTGCTGATAGCGGGTGGTGTAGCGGCTT < 2:2205514/150‑1 GTGCACTTGCTGCAGGCGTTTGTATCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGCGTGGTGAAGTTTTGCTGATAGCGGGTGGTGTAGCGGCTTGCATCGTG < 1:542384/150‑1 GTGCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGC < 1:366517/103‑1 GTGCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGC > 2:366517/1‑103 GCTGTTCCGCACCCGCGAAGACCTGCGCACCGAGTTCAACACCACCCCAGCCGGCTACAAACGCCTGCAGCAAGTGCACGACGCGTTCAAGAAACGTGGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1465421‑1465319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgCACTTGCTGCAGGCGTTTGTAGCCGGCTGGGGTGGTGTTGAACTCGGTGCGCAGGTCTTCGCGGGTGCGGAACAGCCAGTCGCCCTGGGCCTGCACCAGCGTGGTGAAGTTTTGCTGATAGCGGGTGGTGTAGCGGCTTGCATCGTG > NC_002947/1465346‑1465492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |