| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1798193 = | 84 (0.950) | 5 (0.060) | 5/244 | NT | 5.8% | coding (74/1128 nt) | lpxB | lipid‑A‑disaccharide synthase |
| ? | NC_002947 | 1798250 = | 80 (0.920) | coding (131/1128 nt) | lpxB | lipid‑A‑disaccharide synthase | |||||
CCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1798319‑1798193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGAC > NC_002947/1798250‑1798386 CCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGGGGAAATAGGATCGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGATGGAG > 1:2094254/1‑129CCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGGGGAAATAGGATCGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGATGGAG < 2:2094254/129‑1 CCAGGCGCTCCATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGAGG > 1:307697/1‑98 CCAGGCGCTCCATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGAGG < 2:307697/98‑1 ATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTC < 1:289915/114‑1 ATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTC > 2:289915/1‑114 CCAACCCCGATGAAACGCACGTCGGGGTGGCGCGCCCCTTGATGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGC > 1:1069556/1‑150 CAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGA > 2:588808/1‑150 CGCG‑‑CCTTGAGGGAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGAC < 1:588808/150‑1 CCCAGTACCTCGACTAGCCCCATGACGGCCAGGCGCTCCATGGGGAAATAGGATTGCAGGCCCTCGGCCTCCATCAAGGGGCCGCCAACCCCGATGAAACGCACGTCGGGGTGGCGCG‑‑CCTTGAGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1798319‑1798193‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggAGGCCGAGGGCCTGCAATCCTATTTCCCCATGGAGCGCCTGGCCGTCATGGGGCTAGTCGAGGTACTGGGGCGCCTGCGCGAACTGCTCAAGCGCCGCAAGCTGCTGATCCAGACCCTGATCGAAGAAAAGCCCGAC > NC_002947/1798250‑1798386 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |