| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2954698 | 59 (0.670) | 5 (0.070) | 5/200 | NT | 9.2% | intergenic (‑158/‑123) | PP_2586/PP_2587 | putative amino acid transporter/LuxR family transcriptional regulator |
| ? | NC_002947 | = 2954716 | 51 (0.720) | intergenic (‑176/‑105) | PP_2586/PP_2587 | putative amino acid transporter/LuxR family transcriptional regulator | |||||
GTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2954527‑2954698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggaatcaccctttggggtgagcCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAGCCTGCTCGCCTGCCGCGGT < NC_002947/2954716‑2954569 GTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCC > 1:1224419/1‑150GTTGTTGAATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCC > 2:579113/1‑150 TTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAA > 2:1157610/1‑150 TATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCA > 2:1184397/1‑150 ATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCAC < 2:1224419/150‑1 GCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCCAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCC > 1:456914/1‑150 GCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCC > 1:2254431/1‑150 ATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTT > 1:1282420/1‑150 ATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTT > 2:2013072/1‑150 ATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTT > 2:1487608/1‑150 TTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAAT > 1:887179/1‑142 TTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAAT < 2:887179/142‑1 TGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTG < 2:1219775/150‑1 GCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGG > 1:2140710/1‑150 CTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGG > 2:324635/1‑150 CTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGA > 2:439288/1‑150 TCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGA < 1:2077452/149‑1 TCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGA > 2:2077452/1‑149 CCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGC < 2:2050453/150‑1 TGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGTAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCT > 2:2324912/1‑150 CGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCAC < 1:579113/150‑1 AGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTG > 1:477664/1‑114 AGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTG < 2:477664/114‑1 GCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGTAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAA < 1:2324912/150‑1 GTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAA > 2:629124/1‑64 GTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAA < 1:629124/64‑1 GAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGG > 2:1886795/1‑111 GAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGG < 1:1886795/111‑1 GGAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGA < 2:2098527/150‑1 GAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTT < 2:2134976/127‑1 GAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTT > 1:2134976/1‑127 GAATCACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACACCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAG > 1:2296914/1‑150 ACCCTTTGGTGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAGCCTGC > 2:915197/1‑150 ACCCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAGCCTGC < 2:223273/150‑1 CCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGA > 2:1678633/1‑100 CCTTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGA < 1:1678633/100‑1 TTTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAGCCTGCTCGC > 2:2254431/1‑150 TTGGGGTGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAGCCTGCTCGCC < 1:1534415/150‑1 TGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGT < 1:1577257/62‑1 TGAGCCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGT > 2:1577257/1‑62 GCCGGGCAAGGGCTGTGTCCACTCACCCCAAAGGGTGATTCCGGCTGCCTGCAGGGTGTGCGCCCAAAAACCCGCCCCAGAGCTGCGAGCTTTGCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAGCCTGGGCGCCTGCCGCagg > 2:764600/1‑147 GTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCGAGCAGGCTCGCGACCGTCAGGTGTTGTGCAAGGAGGTCGAGCGGAAAGCTCGCAGCGCTGGGGCGGGTTGATGCTCCCACACCCTGCAGGCACCCGGAATCACCCTTTGGGGTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2954527‑2954698‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggaatcaccctttggggtgagcCGGGCAAGGGCTGTGTCCGCTCACCCCAAAGGGTGATTCCGGGTGCCTGCAGGGTGTGGGAGCATCAACCCGCCCCAGCGCTGCGAGCTTTCCGCTCGACCTCCTTGCACAACACCTGACGGTCGCGAGCCTGCTCGCCTGCCGCGGT < NC_002947/2954716‑2954569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |