New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4700803	73 (0.830)	10 (0.130)	7/220	NT	11.6%	intergenic (‑70/+80)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C
	?	NC_002947	= 4700847	87 (1.110)					intergenic (‑114/+36)	kdpD/kdpC	sensor protein/potassium‑transporting ATPase subunit C

GCCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4700641‑4700803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggttCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTG  <  NC_002947/4700847‑4700701                                                                                                                                                                                                                                                                                                                         GCCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGT                                                                                                                                                                   >  1:1412467/1‑150   CGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGT                                                                                                                                                                 >  2:703434/1‑150     GGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAG                                                                                                                                                               >  1:1641606/1‑150              CCCAGGAACACCTTCAGCCGGCCCCGGCTGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTT                                                                                                                                                      >  1:133516/1‑150               CCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGT                                                                                                                                                       >  1:1405792/1‑148               CCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGT                                                                                                                                                       <  2:1405792/148‑1                                                   GGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGG                                                                                                                                                        >  2:79640/1‑111                                                   GGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGG                                                                                                                                                        <  1:79640/111‑1                                                   GGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGC                                                                                                                                                           >  2:1016214/1‑108                                                   GGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGC                                                                                                                                                           <  1:1016214/108‑1                                                       GTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATGCGGTTGTGGTGCCACTGACGTATTCGCGG                                                                                                             <  1:969177/150‑1                                                        TTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCG                                                                                                              <  2:1282615/148‑1                                                        TTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCG                                                                                                              >  1:1282615/1‑148                                                              AACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACC                                                                                                      <  1:2015227/150‑1                                                                                         CTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                             <  1:1908109/116‑1                                                                                         CTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGG                                                                                                             >  2:1908109/1‑116                                                                                                                  CAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGTGCCACTGAC                                                                                                                       <  1:2304715/81‑1                                                                                                                  CAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTTTACCCGCGAATGCGGTGGTGGTGCCACTGAC                                                                                                                       >  2:2304715/1‑81                                                                                                                    ACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGT                                                                                                                                                                 >  2:1335987/1‑37                                                                                                                    ACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGT                                                                                                                                                                 <  1:1335987/37‑1                                                                                                                                            CCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATT                                                                                                                  >  2:1741906/1‑60                                                                                                                                            CCCCTTAACGTGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATT                                                                                                                  <  1:1741906/60‑1                                                                                                                                                      TGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACATGAGTGCCTCCGCCTGCGCCt             >  2:133516/1‑149                                                                                                                                                      TGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGG                                                                  >  2:260769/1‑98                                                                                                                                                      TGTAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGG                                                                  <  1:260769/98‑1                                                                                                                                                        TAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GA                                                             >  2:1107050/1‑100                                                                                                                                                        TAGGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GA                                                             <  1:1107050/100‑1                                                                                                                                                          GGAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGC         >  1:1664003/1‑150                                                                                                                                                           GAGCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAG‑GGCGTGGCTGTTGGACAAAGTAAAGGAGGAAACATGAGTGACTCCGCCCGCGCCGATGCG        >  1:1779091/1‑150                                                                                                                                                             aCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTGCACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCT      <  1:1045008/149‑1                                                                                                                                                             GCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACAT                                 >  1:250528/1‑123                                                                                                                                                             GCGGGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACAT                                 <  2:250528/123‑1                                                                                                                                                                GGTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGAGTAAACATGAGTGACTCCGCCCGCGCCGATGCGCGGTT   >  1:489720/1‑150                                                                                                                                                                 GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACGAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTG  >  1:2046985/1‑150                                                                                                                                                                 GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGC                                                                                >  1:2123200/1‑73                                                                                                                                                                 GTTCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGC                                                                                <  2:2123200/73‑1                                                                                                                                                                 GTTCACCCGCGAATGCAGTGGTAGTGCCACTGACGTAGTCGCGGGTAACCCCGCTCATACACGGACCTGCTGCGGTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTG  <  1:42582/150‑1                                                                                                                                                                                                                                                                                                                         GCCGGGGGCAGCGCCCAGGAACACCTTCAGCCGGCCCCGGCCGGTGCGTGGGAGGTTGGCCAACAGCGCATCGGCGCGGGCGGAGTCACTCATGTTTCATCCTTTACTTTGTCCAACAGTCCGCCGCTTCAGGGAAAGCCCCCTTAACGTGTAGGAGCGGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4700641‑4700803 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggttCACCCGCGAATGCGGTGGTGGTGCCACTGACGTATTCGCGGGTAAACCCGCTCCTACACGTTAAGGGGGCTTTCCCTGAAGCGGCG‑GACTGTTGGACAAAGTAAAGGATGAAACATGAGTGACTCCGCCCGCGCCGATGCGCTGTTG  <  NC_002947/4700847‑4700701

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.