| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5552384 | 106 (1.200) | 7 (0.080) | 7/234 | NT | 6.8% | coding (1565/1566 nt) | PP_4882 | iron ABC transporter permease |
| ? | NC_002947 | = 5552417 | 91 (1.090) | intergenic (+32/+629) | PP_4882/PP_5717 | iron ABC transporter permease/hypothetical protein | |||||
GCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5552231‑5552384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcttg‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGTGC < NC_002947/5552417‑5552269 GCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGG > 1:838193/1‑150 CCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTGTTTGAACAAGGC > 1:1529841/1‑150 CCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGC > 1:1529893/1‑150 GACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG > 2:1641779/1‑150 gCCTGGGCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAA > 2:220167/2‑130 gCCTGGGCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAA < 1:220167/129‑1 GCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTCTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGT < 1:2261120/150‑1 TCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTCGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAA < 1:204119/136‑1 TCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTGAAAGCTCGCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAA > 2:204119/1‑136 GCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTG < 1:261854/125‑1 GCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTG > 2:261854/1‑125 GTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTT < 2:1965819/82‑1 GTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTT > 1:1965819/1‑82 AGGCTTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGT > 1:1515611/1‑150 AGGCTTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGT < 2:914825/150‑1 TTG‑‑‑‑‑T‑GCCCAGGCCACATGGTGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGT < 1:336667/150‑1 TTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGT < 1:835735/150‑1 TTG‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGT < 1:1973046/150‑1 G‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGTGC > 1:2244075/1‑150 GCCCGACCGGCATGACCACCCTGGCCACCGAGGTGTGGGCACACACAGCCAACGTCGAGTTCGCGGCGGCGGCGCCGTATGCGGCGTTGTTGATTGTGGTGTCGGGGTTGCCGGTGTATTTGCTGACTACGCGGATGTATTTGAACAAGGCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5552231‑5552384‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcttg‑‑‑‑‑T‑GCCCAGGCCACATGGCGGCCTGGGCAAGCTTTCAAGCCTTGTTCAAATACATCCGCGTAGTCAGCAAATACACCGGCAACCCCGACACCACAATCAACAACGCCGCATACGGCGCCGCCGCCGCGAACTCGACGTTGGCTGTGTGTGC < NC_002947/5552417‑5552269 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |