New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4950395 =	69 (0.780)	34 (0.410)	31/234	NT	34.3%	intergenic (‑7/+3)	fliM/fliL	flagellar biosynthesis switching/energizing protein/flagellar protein FliL
	?	NC_002947	= 5224672	NA (NA)					intergenic (‑328/+51)	PP_4603/PP_4604	transposase/DMT superfamily permease

CCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCAAGGCCGG  >  NC_002947/5224536‑5224821                                                                                                                                         |                                                                                                                                                      cccTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCg                                                                                                                                          <  1:1771043/150‑1 (MQ=11)    tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGtt                                                                                                                                       <  1:307715/150‑1 (MQ=32)    tAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGtt                                                                                                                                       >  1:682339/1‑150 (MQ=32)     aaCAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGttt                                                                                                                                      >  2:1849384/1‑150 (MQ=33)                 ggcggcTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAgg                                                                                                                          <  2:314526/150‑1 (MQ=255)                  gcggcTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAggg                                                                                                                         <  1:26606/150‑1 (MQ=255)                     gcTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCATCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTGTACCCGCGAAAGggccg                                                                                                                      >  1:947690/1‑150 (MQ=255)                         gCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGccc                                                                                                                  <  1:1849384/150‑1 (MQ=255)                           ccTACCGTGCCAACCGACTTTTATTTTTAAAAATTTAAGCGTCTCTGGAGAACTGCAGCCGTTCAACTCATTTTTACGACGGGCCAGCGCAGCCAGGAAGGGCTGGGTGATCTCCTTCACGGCGGTTTACCCGCCAAAGAACCGGCCCAg                                                                                                                >  2:854153/1‑150 (MQ=9)                           ccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACCCCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAg                                                                                                                <  1:1713993/150‑1 (MQ=255)                           ccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCg                                                                                                                                          >  2:1662354/1‑124 (MQ=11)                           ccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCg                                                                                                                                          <  1:1662354/124‑1 (MQ=11)                           ccTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAg                                                                                                                <  1:1749344/150‑1 (MQ=255)                             tACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGc                                                                                                              >  2:2047690/1‑150 (MQ=255)                              aCCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCCTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAACGGGCCGGCCCAGGCa                                                                                                             >  1:725708/1‑150 (MQ=255)                              aCCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAg                                                                                                                <  1:1748397/147‑1 (MQ=255)                              aCCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAg                                                                                                                >  2:1748397/1‑147 (MQ=255)                               ccGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCaa                                                                                                            >  1:1208001/1‑150 (MQ=255)                                   gCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACcat                                                                                                        <  2:643166/150‑1 (MQ=255)                                     cAACCGCCTTTTTTTTTTCAAAATGTTATCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCCAGCAACcatca                                                                                                      >  2:781028/1‑150 (MQ=17)                                      aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGaaa                                                                                                                            <  1:456364/127‑1 (MQ=255)                                      aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGaaa                                                                                                                            >  2:456364/1‑127 (MQ=255)                                      aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGggccg                                                                                                                      <  2:2227775/133‑1 (MQ=255)                                      aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGggccg                                                                                                                      >  1:2227775/1‑133 (MQ=255)                                      aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACcatcat                                                                                                     <  1:1368283/150‑1 (MQ=255)                                      aaCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTACGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACcatcat                                                                                                     <  1:495112/150‑1 (MQ=255)                                         cGCCTTTTCTTTTTCATTATTTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTa                                                                                                  >  2:1208582/1‑150 (MQ=255)                                         cGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAAc                                                                                                           <  2:2119884/141‑1 (MQ=255)                                         cGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAAc                                                                                                           >  1:2119884/1‑141 (MQ=255)                                          gCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGAGCTGGGTTATGTATTAGAAAGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTAt                                                                                                 <  1:1798933/150‑1 (MQ=18)                                           ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTAtt                                                                                                >  2:1798933/1‑150 (MQ=255)                                           ccTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTAtt                                                                                                >  2:1281411/1‑150 (MQ=255)                                            cttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTAttt                                                                                               <  2:1208001/150‑1 (MQ=255)                                             ttttcttttTCAAAATGTCAGCGTCGCTGCGGACCTGCCTCCGTACACCTCCTGTTCGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTg                                                                                              <  2:1716478/150‑1 (MQ=18)                                             ttttcttttTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTg                                                                                              >  2:1669628/1‑150 (MQ=255)                                                  tttttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTAc                                                                                         >  1:1397303/1‑150 (MQ=255)                                                  tttttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTAc                                                                                         >  2:1463326/1‑150 (MQ=255)                                                    tttCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACca                                                                                       <  1:1669628/150‑1 (MQ=255)                                                         aaaTGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCacaaca                                                                                  >  2:2224274/1‑150 (MQ=255)                                                             gTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCt                                                                              <  1:845080/150‑1 (MQ=255)                                                                aGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACcatcat                                                                                                     <  1:279081/124‑1 (MQ=255)                                                                aGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACcatcat                                                                                                     >  2:279081/1‑124 (MQ=255)                                                                       cTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCCCAGCCACCCt                                                                    >  1:940054/1‑150 (MQ=255)                                                                        tGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCcgc                                                                                                                                <  2:1011766/89‑1 (MQ=255)                                                                        tGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCcgc                                                                                                                                >  1:1011766/1‑89 (MQ=255)                                                                        tGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTg                                                                   <  1:220997/150‑1 (MQ=255)                                                                        tGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTg                                                                   <  1:1463326/150‑1 (MQ=255)                                                                           ggAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGcc                                                                >  2:2120992/1‑150 (MQ=255)                                                                           ggAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGcc                                                                >  1:1632404/1‑150 (MQ=255)                                                                            gAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGccc                                                               >  2:1101571/1‑150 (MQ=255)                                                                               cTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCggg                                                            >  1:1959331/1‑150 (MQ=255)                                                                                tGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCa                                                                                                                 >  2:1769121/1‑96 (MQ=255)                                                                                tGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCa                                                                                                                 <  1:1769121/96‑1 (MQ=255)                                                                                tGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCgggg                                                           >  2:853950/1‑150 (MQ=255)                                                                                tGAAGCCGCACACCTCATGTTTTCTGCGCGACAGCGCAGCCCGGAAGGGATGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCgggg                                                           <  2:725708/150‑1 (MQ=255)                                                                                  aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTAc                                                                                         >  2:1998825/1‑118 (MQ=255)                                                                                  aaGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTAc                                                                                         <  1:1998825/118‑1 (MQ=255)                                                                                   aGCCGTACACCTCATGTTTGCTGCGCGACAGCGGAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCtt                                                        <  2:275169/150‑1 (MQ=255)                                                                                     ccGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTAttt                                                                                               <  1:1048097/109‑1 (MQ=255)                                                                                     ccGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTAttt                                                                                               >  2:1048097/1‑109 (MQ=255)                                                                                           acCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAaca                                                <  1:853950/150‑1 (MQ=255)                                                                                            ccTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAacac                                               <  1:2120992/150‑1 (MQ=255)                                                                                             cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCatcatc                                                                                                    <  2:896348/96‑1 (MQ=255)                                                                                             cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCatcatc                                                                                                    >  1:896348/1‑96 (MQ=255)                                                                                             cTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACAcc                                              >  2:328181/1‑150 (MQ=255)                                                                                              tCATGTTTGCTGCGCGACTGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCa                                             >  2:65036/1‑150 (MQ=255)                                                                                                aTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGc                                           >  2:1231922/1‑150 (MQ=255)                                                                                                aTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGc                                           >  2:952825/1‑150 (MQ=255)                                                                                                aTGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGc                                           >  1:467687/1‑150 (MQ=255)                                                                                                   tttGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGcc                                                                         >  2:917436/1‑117 (MQ=255)                                                                                                   tttGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGcc                                                                         <  1:917436/117‑1 (MQ=255)                                                                                                        tgcGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTccc                                   >  2:85268/1‑150 (MQ=255)                                                                                                           gcgACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGc                                >  1:2306504/1‑150 (MQ=255)                                                                                                             gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCa                              <  1:2047690/150‑1 (MQ=255)                                                                                                             gACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACAACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCa                              >  1:1325997/1‑150 (MQ=255)                                                                                                                aGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTa                           >  1:1399260/1‑150 (MQ=255)                                                                                                                 gcgcAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTg                                                                   <  1:548179/109‑1 (MQ=255)                                                                                                                 gcgcAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTg                                                                   >  2:548179/1‑109 (MQ=255)                                                                                                                 gcgcAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCCACCCGGCAGTTTTTTCCCCGCCATTAc                          <  2:1959331/150‑1 (MQ=38)                                                                                                                   gcAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCg                        >  1:1239950/1‑150 (MQ=255)                                                                                                                     aGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGcc                      >  2:101524/1‑150 (MQ=255)                                                                                                                               ggCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGa            <  2:137886/150‑1 (MQ=255)                                                                                                                               ggCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGa            <  1:1231922/150‑1 (MQ=255)                                                                                                                               ggCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGa            <  2:467687/150‑1 (MQ=255)                                                                                                                                 cTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGc          >  1:384351/1‑150 (MQ=255)                                                                                                                                  tGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCa         >  2:1173347/1‑150 (MQ=255)                                                                                                                                    ggTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCAAg       <  1:952825/150‑1 (MQ=255)                                                                                                                                    ggTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCAAg       <  2:2306504/150‑1 (MQ=255)                                                                                                                                    ggTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCAAg       <  1:328181/150‑1 (MQ=255)                                                                                                                                    ggTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCAAg       >  2:2140597/1‑150 (MQ=255)                                                                                                                                        aTCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCggg                                                            >  1:2089217/1‑93 (MQ=255)                                                                                                                                        aTCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCggg                                                            <  2:2089217/93‑1 (MQ=255)                                                                                                                                        aTCTCCTACAGGGCGGTTGACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCCCAGCCACCCTGGCCCGGGGCTTGCGAACCACCAGCACATCCCCCGCCCTCACCGCCACACCCCCGCGCAAGGCCg   <  2:682339/150‑1 (MQ=255)                                                                                                                                         tctcCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCAcc                                                                      >  2:915903/1‑82 (MQ=255)                                                                                                                                         tctcCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCAcc                                                                      <  1:915903/82‑1 (MQ=255)                                                                                                                                         tctcCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCAAGGCCgg  >  1:1411772/1‑150 (MQ=255)                                                                                                                                         tctcCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACAGGCCCCGCCATTACCGCCACCAACCCGAGCAAGGCCgg  >  1:2238986/1‑150 (MQ=255)                                                                                                                                         |                                                                                                                                                      CCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGCGGTTTACCCGCGAAAGGGCCGGCCCAGGCAACCATCATCTATTTGGCTACCACAACACCCTCAGCCACCCTGGCCCGGGGCTTGCGAAACACCAGCACATTCCCCGCCATTACCGCCACCAACCCGAGCAAGGCCGG  >  NC_002947/5224536‑5224821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.