New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4578249	0 (0.000)	20 (1.530)	17/250	0.1	100%	intergenic (+64/‑73)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	= 5763126	NA (NA)					intergenic (+145/+373)	PP_5050/PP_5051	transposase/hypothetical protein

TAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4578131‑4578249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGC  <  NC_002947/5763126‑5762992                                                                                                                                                                                                                                                                TAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGC                                                                                                                        >  2:231980/1‑136      CCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCAACACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATT                                                                                                                   >  1:270857/1‑136                  AAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAAC                                                                                                       >  2:231526/1‑136                    AAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGC                                                                                                     >  1:12463/1‑136                       CCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCAT                                                                                                  <  2:356801/136‑1                        CCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATC                                                                                                 <  1:211425/136‑1                                    AAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTATATTGCCGGAGGCAAAATTTCAGTAAAAACGCCATCGGCCTCTCTCAG                                                                                     >  2:262399/1‑136                                         CCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACC                                                                                <  1:252552/136‑1                                          CTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCT                                                                               >  2:193217/1‑136                                                                GGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCA                                                         >  1:154127/1‑136                                                                GGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCA                                                         >  1:85163/1‑136                                                                        TCGCTGGTAAACCCGCTCCTACTGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTATAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTT                                                 <  2:296109/136‑1                                                                          GCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCT                                               <  1:25433/136‑1                                                                          GCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCT                                               >  2:172545/1‑136                                                                                              AGGTTCATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCC                           <  1:193217/136‑1                                                                                                   CATCACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCA                      >  2:139133/1‑136                                                                                                      CACAGGCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTT                   >  1:18005/1‑136                                                                                                           GCGCATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGC              <  2:270857/136‑1                                                                                                              CATGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGGGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGG           <  1:231980/136‑1                                                                                                                TGTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCg         >  2:262934/1‑135                                                                                                                 GTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGC                            <  2:138522/116‑1                                                                                                                 GTAGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGC                            >  1:138522/1‑116                                                                                                                   AGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCG      <  1:309049/136‑1                                                                                                                   AGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCG      >  2:276248/1‑136                                                                                                                   AGGAGATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCG      >  1:146981/1‑136                                                                                                                       GATTCTTTGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGC  >  2:14490/1‑136                                                                                                                       GATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGC  >  2:167887/1‑136                                                                                                                                                                                                                                                                TAAACCCACTGCGGTGAAAAAGCCCCGGGCGGTGAAAAAGCCTACTGCCGGTTAAGCCTGTCCGGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGTTCATCACAGGCGCATGTAGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4578131‑4578249 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagATTCTATGGCCGGAGGCAAATTTTCAGTAAAAACGCCATCGGCCTCTCTCAGCAACCTCGAGGTACGAGTCAGCGTGCCAGAGAATTTCTCCCCAGCATTGGATACTGCCCGTCAGTTTGGGCGGGCTGCGTTGC  <  NC_002947/5763126‑5762992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.