New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4578249	0 (0.000)	20 (1.530)	17/250	0.1	100%	intergenic (+64/‑73)	PP_4054/glgX	hypothetical protein/glycogen debranching enzyme
	?	NC_002947	= 5763126	NA (NA)					intergenic (+145/+373)	PP_5050/PP_5051	transposase/hypothetical protein

CCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATC  >  NC_002947/5763001‑5763258                                                                                                                              |                                                                                                                                     cccgcccAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTAcccc                                                                                                                            <  2:8324/136‑1 (MQ=32)           cTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGTCCATAGAATCTCCTACCCCAATCCTGTgg                                                                                                                  <  1:307214/136‑1 (MQ=255)                 ggCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACATCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCgg                                                                                                            >  2:251229/1‑136 (MQ=255)                  gCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTGCCCCAATCCTGTGGGAGCGGc                                                                                                           <  2:120670/136‑1 (MQ=255)                          cAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTc                                                                                                   <  2:235848/136‑1 (MQ=255)                                     agaAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGgcg                                                                                        >  2:241200/1‑136 (MQ=255)                                                 gCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGcccc                                                                            <  1:98186/136‑1 (MQ=255)                                                        gACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCAtt                                                                     <  1:196033/136‑1 (MQ=255)                                                                      ggTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAAt                                                       >  1:327013/1‑136 (MQ=255)                                                                      ggTTGCTGACAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTCTGGGAGCGGCCTTGTGTCGCGAAGGGGCGCAAAGCGGCCCCAGCCATTTCAgacgtcgtcaa                                                       >  1:37559/1‑131 (MQ=25)                                                                                   ggCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCtgt                                          >  2:22090/1‑136 (MQ=255)                                                                                         tGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGc                                    <  2:299508/136‑1 (MQ=255)                                                                                             gTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCa                                >  1:309310/1‑136 (MQ=255)                                                                                             gTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCACAGCCATTTCAGTCGACTGAATGGACCGTTCCAGTGCCCGcagaa                                >  1:41264/1‑132 (MQ=38)                                                                                                  tACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACctct                           <  1:241200/136‑1 (MQ=255)                                                                                                                           gAATCTCCTTCCCCTATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGGAAAGCGGCCCCAGGCATTTCAGTCGTCTGAATGCACCGTTCGTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAATATc  <  2:37559/136‑1 (MQ=38)                                                                                                                           gAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATc  <  2:327013/136‑1 (MQ=255)                                                                                                                              |                                                                                                                                     CCCGCCCAAACTGACGGGCAGTATCCAATGCTGGGGAGAAATTCTCTGGCACGCTGACTCGTACCTCGAGGTTGCTGAGAGAGGCCGATGGCGTTTTTACTGAAAATTTGCCTCCGGCCATAGAATCTCCTACCCCAATCCTGTGGGAGCGGCCTTGTGTCGCGATGGGGCGCAAAGCGGCCCCAGCCATTTCAGTCGTCTGAATGCACCGTTCCTGTGCCCGCTGCACCTCTGGAAGGCACAAATCCCCTCAAAATC  >  NC_002947/5763001‑5763258

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.